Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1773

Experiment: 2 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1771 and DvMF_1772 are separated by 86 nucleotidesDvMF_1772 and DvMF_1773 are separated by 99 nucleotidesDvMF_1773 and DvMF_1774 are separated by 112 nucleotides DvMF_1771: DvMF_1771 - hypothetical protein (RefSeq), at 2,167,524 to 2,167,814 _1771 DvMF_1772: DvMF_1772 - response regulator receiver protein (RefSeq), at 2,167,901 to 2,168,356 _1772 DvMF_1773: DvMF_1773 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 2,168,456 to 2,169,682 _1773 DvMF_1774: DvMF_1774 - hypothetical protein (RefSeq), at 2,169,795 to 2,170,553 _1774 Position (kb) 2168 2169 2170Strain fitness (log2 ratio) -1 0 1at 2167.900 kb on + strandat 2168.096 kb on + strand, within DvMF_1772at 2168.237 kb on - strand, within DvMF_1772at 2168.303 kb on - strand, within DvMF_1772at 2169.026 kb on + strand, within DvMF_1773at 2169.080 kb on + strand, within DvMF_1773at 2169.140 kb on - strand, within DvMF_1773at 2169.390 kb on + strand, within DvMF_1773at 2169.390 kb on + strand, within DvMF_1773at 2169.463 kb on - strand, within DvMF_1773at 2169.484 kb on - strand, within DvMF_1773at 2169.484 kb on - strand, within DvMF_1773at 2169.539 kb on + strand, within DvMF_1773at 2169.542 kb on - strand, within DvMF_1773at 2169.552 kb on - strand, within DvMF_1773at 2169.676 kb on + strandat 2169.694 kb on + strandat 2169.920 kb on + strand, within DvMF_1774at 2170.047 kb on + strand, within DvMF_1774at 2170.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 day starvation, 37C
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2,167,900 + +0.5
2,168,096 + DvMF_1772 0.43 +1.0
2,168,237 - DvMF_1772 0.74 +0.7
2,168,303 - DvMF_1772 0.88 +0.6
2,169,026 + DvMF_1773 0.46 +0.5
2,169,080 + DvMF_1773 0.51 +0.5
2,169,140 - DvMF_1773 0.56 +0.5
2,169,390 + DvMF_1773 0.76 +0.6
2,169,390 + DvMF_1773 0.76 -0.8
2,169,463 - DvMF_1773 0.82 +0.2
2,169,484 - DvMF_1773 0.84 +1.1
2,169,484 - DvMF_1773 0.84 +0.4
2,169,539 + DvMF_1773 0.88 +0.5
2,169,542 - DvMF_1773 0.89 +1.3
2,169,552 - DvMF_1773 0.89 +1.0
2,169,676 + +0.3
2,169,694 + +0.9
2,169,920 + DvMF_1774 0.16 +0.3
2,170,047 + DvMF_1774 0.33 +0.2
2,170,618 - +0.4

Or see this region's nucleotide sequence