Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1770

Experiment: 2 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1768 and DvMF_1769 are separated by 2 nucleotidesDvMF_1769 and DvMF_1770 are separated by 72 nucleotidesDvMF_1770 and DvMF_1771 are separated by 125 nucleotidesDvMF_1771 and DvMF_1772 are separated by 86 nucleotides DvMF_1768: DvMF_1768 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,164,469 to 2,166,199 _1768 DvMF_1769: DvMF_1769 - response regulator receiver protein (RefSeq), at 2,166,202 to 2,166,591 _1769 DvMF_1770: DvMF_1770 - hypothetical protein (RefSeq), at 2,166,664 to 2,167,398 _1770 DvMF_1771: DvMF_1771 - hypothetical protein (RefSeq), at 2,167,524 to 2,167,814 _1771 DvMF_1772: DvMF_1772 - response regulator receiver protein (RefSeq), at 2,167,901 to 2,168,356 _1772 Position (kb) 2166 2167 2168Strain fitness (log2 ratio) -1 0 1at 2165.664 kb on - strand, within DvMF_1768at 2165.742 kb on - strand, within DvMF_1768at 2166.026 kb on - strand, within DvMF_1768at 2166.341 kb on + strand, within DvMF_1769at 2166.815 kb on - strand, within DvMF_1770at 2166.817 kb on + strand, within DvMF_1770at 2166.845 kb on - strand, within DvMF_1770at 2166.845 kb on - strand, within DvMF_1770at 2167.061 kb on + strand, within DvMF_1770at 2167.063 kb on - strand, within DvMF_1770at 2167.900 kb on + strandat 2168.096 kb on + strand, within DvMF_1772at 2168.237 kb on - strand, within DvMF_1772at 2168.303 kb on - strand, within DvMF_1772

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 day starvation, 37C
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2,165,664 - DvMF_1768 0.69 -1.1
2,165,742 - DvMF_1768 0.74 -1.0
2,166,026 - DvMF_1768 0.90 -0.9
2,166,341 + DvMF_1769 0.36 -1.1
2,166,815 - DvMF_1770 0.21 -0.7
2,166,817 + DvMF_1770 0.21 -0.3
2,166,845 - DvMF_1770 0.25 -0.0
2,166,845 - DvMF_1770 0.25 -0.3
2,167,061 + DvMF_1770 0.54 -0.3
2,167,063 - DvMF_1770 0.54 -0.2
2,167,900 + +0.5
2,168,096 + DvMF_1772 0.43 +1.0
2,168,237 - DvMF_1772 0.74 +0.7
2,168,303 - DvMF_1772 0.88 +0.6

Or see this region's nucleotide sequence