Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1605

Experiment: 2 day starvation, 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1604 and DvMF_1605 overlap by 4 nucleotidesDvMF_1605 and DvMF_1606 are separated by 223 nucleotides DvMF_1604: DvMF_1604 - proton-translocating NADH-quinone oxidoreductase, chain M (RefSeq), at 1,974,962 to 1,976,521 _1604 DvMF_1605: DvMF_1605 - NADH dehydrogenase (quinone) (RefSeq), at 1,976,518 to 1,977,945 _1605 DvMF_1606: DvMF_1606 - hypothetical protein (RefSeq), at 1,978,169 to 1,979,344 _1606 Position (kb) 1976 1977 1978Strain fitness (log2 ratio) -1 0 1at 1975.602 kb on - strand, within DvMF_1604at 1975.895 kb on - strand, within DvMF_1604at 1976.143 kb on - strand, within DvMF_1604at 1976.528 kb on + strandat 1976.546 kb on - strandat 1976.620 kb on + strandat 1976.735 kb on + strand, within DvMF_1605at 1976.775 kb on + strand, within DvMF_1605at 1976.925 kb on - strand, within DvMF_1605at 1977.188 kb on + strand, within DvMF_1605at 1977.421 kb on + strand, within DvMF_1605at 1977.436 kb on + strand, within DvMF_1605at 1977.454 kb on + strand, within DvMF_1605at 1977.489 kb on + strand, within DvMF_1605at 1977.562 kb on - strand, within DvMF_1605at 1977.634 kb on - strand, within DvMF_1605at 1977.730 kb on + strand, within DvMF_1605at 1977.730 kb on + strand, within DvMF_1605at 1977.730 kb on + strand, within DvMF_1605at 1977.733 kb on - strand, within DvMF_1605at 1977.738 kb on - strand, within DvMF_1605at 1977.738 kb on - strand, within DvMF_1605at 1977.738 kb on - strand, within DvMF_1605at 1978.318 kb on - strand, within DvMF_1606at 1978.530 kb on + strand, within DvMF_1606at 1978.546 kb on - strand, within DvMF_1606at 1978.574 kb on - strand, within DvMF_1606at 1978.811 kb on - strand, within DvMF_1606at 1978.895 kb on + strand, within DvMF_1606at 1978.929 kb on - strand, within DvMF_1606

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 day starvation, 37C
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1,975,602 - DvMF_1604 0.41 -1.2
1,975,895 - DvMF_1604 0.60 +0.2
1,976,143 - DvMF_1604 0.76 +1.0
1,976,528 + -0.4
1,976,546 - -1.0
1,976,620 + -0.2
1,976,735 + DvMF_1605 0.15 -0.4
1,976,775 + DvMF_1605 0.18 +0.2
1,976,925 - DvMF_1605 0.29 -0.9
1,977,188 + DvMF_1605 0.47 -0.1
1,977,421 + DvMF_1605 0.63 -0.3
1,977,436 + DvMF_1605 0.64 -0.2
1,977,454 + DvMF_1605 0.66 +0.3
1,977,489 + DvMF_1605 0.68 +0.3
1,977,562 - DvMF_1605 0.73 -0.6
1,977,634 - DvMF_1605 0.78 -0.2
1,977,730 + DvMF_1605 0.85 +0.1
1,977,730 + DvMF_1605 0.85 -0.8
1,977,730 + DvMF_1605 0.85 -0.1
1,977,733 - DvMF_1605 0.85 -0.6
1,977,738 - DvMF_1605 0.85 -0.6
1,977,738 - DvMF_1605 0.85 -0.7
1,977,738 - DvMF_1605 0.85 -0.6
1,978,318 - DvMF_1606 0.13 +0.2
1,978,530 + DvMF_1606 0.31 -0.0
1,978,546 - DvMF_1606 0.32 -0.3
1,978,574 - DvMF_1606 0.34 +0.7
1,978,811 - DvMF_1606 0.55 +0.2
1,978,895 + DvMF_1606 0.62 +0.5
1,978,929 - DvMF_1606 0.65 +0.3

Or see this region's nucleotide sequence