Experiment: 2 day starvation, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1523 and DvMF_1524 are separated by 215 nucleotides DvMF_1524 and DvMF_1525 are separated by 122 nucleotides DvMF_1525 and DvMF_1526 are separated by 305 nucleotides
DvMF_1523: DvMF_1523 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,878,423 to 1,878,818
_1523
DvMF_1524: DvMF_1524 - flavin reductase domain protein FMN-binding (RefSeq), at 1,879,034 to 1,879,681
_1524
DvMF_1525: DvMF_1525 - Antibiotic biosynthesis monooxygenase (RefSeq), at 1,879,804 to 1,880,109
_1525
DvMF_1526: DvMF_1526 - chromate transporter, chromate ion transporter (CHR) family (RefSeq), at 1,880,415 to 1,881,662
_1526
Position (kb)
1879
1880
1881 Strain fitness (log2 ratio)
-1
0
1 at 1879.039 kb on - strand at 1879.118 kb on - strand, within DvMF_1524 at 1879.367 kb on + strand, within DvMF_1524 at 1879.375 kb on - strand, within DvMF_1524 at 1879.375 kb on - strand, within DvMF_1524 at 1879.432 kb on - strand, within DvMF_1524 at 1879.508 kb on - strand, within DvMF_1524 at 1879.787 kb on + strand at 1879.795 kb on - strand at 1880.029 kb on + strand, within DvMF_1525 at 1880.137 kb on - strand at 1880.142 kb on - strand at 1880.161 kb on - strand at 1880.161 kb on - strand at 1880.465 kb on - strand at 1880.475 kb on - strand at 1880.502 kb on - strand at 1880.509 kb on + strand at 1880.513 kb on + strand at 1880.791 kb on - strand, within DvMF_1526 at 1880.909 kb on - strand, within DvMF_1526
Per-strain Table
Position Strand Gene LocusTag Fraction 2 day starvation, 37C remove 1,879,039 - +1.2 1,879,118 - DvMF_1524 0.13 +0.7 1,879,367 + DvMF_1524 0.51 +0.7 1,879,375 - DvMF_1524 0.53 +0.1 1,879,375 - DvMF_1524 0.53 +0.2 1,879,432 - DvMF_1524 0.61 +1.0 1,879,508 - DvMF_1524 0.73 +0.6 1,879,787 + +0.7 1,879,795 - -0.2 1,880,029 + DvMF_1525 0.74 +0.8 1,880,137 - +0.1 1,880,142 - -0.2 1,880,161 - +1.7 1,880,161 - -1.3 1,880,465 - -0.0 1,880,475 - +0.4 1,880,502 - -0.2 1,880,509 + -0.5 1,880,513 + -1.6 1,880,791 - DvMF_1526 0.30 -1.0 1,880,909 - DvMF_1526 0.40 +1.1
Or see this region's nucleotide sequence