Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09110

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09090 and PGA1_c09100 overlap by 32 nucleotidesPGA1_c09100 and PGA1_c09110 overlap by 4 nucleotidesPGA1_c09110 and PGA1_c09120 are separated by 460 nucleotides PGA1_c09090: PGA1_c09090 - thiamine biosynthesis protein ThiS, at 934,348 to 934,545 _c09090 PGA1_c09100: PGA1_c09100 - putative thiamine biosynthesis oxidoreductase ThiO, at 934,514 to 935,488 _c09100 PGA1_c09110: PGA1_c09110 - thiamine biosynthesis protein ThiC, at 935,485 to 937,284 _c09110 PGA1_c09120: PGA1_c09120 - biotin synthase BioB, at 937,745 to 938,722 _c09120 Position (kb) 935 936 937 938Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 934.513 kb on - strand, within PGA1_c09090at 934.529 kb on - strandat 934.539 kb on + strandat 934.568 kb on - strandat 934.624 kb on - strand, within PGA1_c09100at 934.636 kb on - strand, within PGA1_c09100at 934.659 kb on - strand, within PGA1_c09100at 934.659 kb on - strand, within PGA1_c09100at 934.685 kb on + strand, within PGA1_c09100at 934.685 kb on + strand, within PGA1_c09100at 934.693 kb on - strand, within PGA1_c09100at 934.693 kb on - strand, within PGA1_c09100at 934.693 kb on - strand, within PGA1_c09100at 934.710 kb on + strand, within PGA1_c09100at 934.719 kb on - strand, within PGA1_c09100at 934.846 kb on + strand, within PGA1_c09100at 934.854 kb on - strand, within PGA1_c09100at 934.854 kb on - strand, within PGA1_c09100at 934.903 kb on + strand, within PGA1_c09100at 934.943 kb on + strand, within PGA1_c09100at 935.068 kb on - strand, within PGA1_c09100at 935.081 kb on + strand, within PGA1_c09100at 935.089 kb on - strand, within PGA1_c09100at 935.139 kb on + strand, within PGA1_c09100at 935.147 kb on - strand, within PGA1_c09100at 935.147 kb on - strand, within PGA1_c09100at 935.172 kb on + strand, within PGA1_c09100at 935.177 kb on + strand, within PGA1_c09100at 935.217 kb on - strand, within PGA1_c09100at 935.228 kb on - strand, within PGA1_c09100at 935.276 kb on - strand, within PGA1_c09100at 935.351 kb on + strand, within PGA1_c09100at 935.429 kb on - strandat 935.495 kb on + strandat 935.507 kb on + strandat 935.515 kb on - strandat 935.515 kb on - strandat 935.608 kb on + strandat 935.651 kb on - strandat 935.654 kb on + strandat 935.664 kb on + strandat 935.664 kb on + strandat 935.666 kb on + strand, within PGA1_c09110at 935.682 kb on + strand, within PGA1_c09110at 935.713 kb on + strand, within PGA1_c09110at 935.779 kb on + strand, within PGA1_c09110at 935.779 kb on + strand, within PGA1_c09110at 935.786 kb on + strand, within PGA1_c09110at 935.794 kb on - strand, within PGA1_c09110at 935.950 kb on + strand, within PGA1_c09110at 935.950 kb on + strand, within PGA1_c09110at 935.964 kb on - strand, within PGA1_c09110at 936.044 kb on + strand, within PGA1_c09110at 936.076 kb on + strand, within PGA1_c09110at 936.101 kb on - strand, within PGA1_c09110at 936.107 kb on + strand, within PGA1_c09110at 936.107 kb on + strand, within PGA1_c09110at 936.126 kb on + strand, within PGA1_c09110at 936.142 kb on + strand, within PGA1_c09110at 936.181 kb on + strand, within PGA1_c09110at 936.236 kb on - strand, within PGA1_c09110at 936.349 kb on - strand, within PGA1_c09110at 936.355 kb on + strand, within PGA1_c09110at 936.380 kb on - strand, within PGA1_c09110at 936.407 kb on + strand, within PGA1_c09110at 936.440 kb on - strand, within PGA1_c09110at 936.447 kb on - strand, within PGA1_c09110at 936.565 kb on - strand, within PGA1_c09110at 936.596 kb on + strand, within PGA1_c09110at 936.596 kb on + strand, within PGA1_c09110at 936.596 kb on + strand, within PGA1_c09110at 936.632 kb on - strand, within PGA1_c09110at 936.647 kb on + strand, within PGA1_c09110at 936.664 kb on + strand, within PGA1_c09110at 936.830 kb on - strand, within PGA1_c09110at 936.904 kb on + strand, within PGA1_c09110at 936.906 kb on - strand, within PGA1_c09110at 936.912 kb on - strand, within PGA1_c09110at 936.912 kb on - strand, within PGA1_c09110at 936.913 kb on + strand, within PGA1_c09110at 936.913 kb on + strand, within PGA1_c09110at 936.921 kb on - strand, within PGA1_c09110at 936.937 kb on + strand, within PGA1_c09110at 937.010 kb on - strand, within PGA1_c09110at 937.050 kb on + strand, within PGA1_c09110at 937.079 kb on - strand, within PGA1_c09110at 937.104 kb on + strand, within PGA1_c09110at 937.130 kb on - strandat 937.130 kb on - strandat 937.132 kb on + strandat 937.147 kb on - strandat 937.161 kb on + strandat 937.168 kb on - strandat 937.233 kb on + strandat 937.292 kb on - strandat 937.294 kb on + strandat 937.301 kb on + strandat 937.361 kb on + strandat 937.369 kb on - strandat 937.382 kb on + strandat 937.425 kb on + strandat 937.450 kb on + strandat 937.458 kb on - strandat 937.524 kb on - strandat 937.524 kb on - strandat 937.530 kb on + strandat 937.530 kb on + strandat 937.537 kb on + strandat 937.537 kb on + strandat 937.537 kb on + strandat 937.537 kb on + strandat 937.537 kb on + strandat 937.542 kb on + strandat 937.545 kb on - strandat 937.623 kb on + strandat 937.647 kb on + strandat 937.655 kb on + strandat 937.655 kb on + strandat 937.663 kb on - strandat 937.724 kb on - strandat 937.739 kb on - strandat 937.762 kb on + strandat 937.772 kb on + strandat 937.921 kb on + strand, within PGA1_c09120at 937.929 kb on - strand, within PGA1_c09120at 937.963 kb on + strand, within PGA1_c09120at 937.981 kb on + strand, within PGA1_c09120at 938.067 kb on + strand, within PGA1_c09120at 938.139 kb on + strand, within PGA1_c09120at 938.145 kb on + strand, within PGA1_c09120at 938.145 kb on + strand, within PGA1_c09120at 938.165 kb on + strand, within PGA1_c09120at 938.190 kb on - strand, within PGA1_c09120at 938.241 kb on - strand, within PGA1_c09120at 938.262 kb on + strand, within PGA1_c09120

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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934,513 - PGA1_c09090 0.83 -3.5
934,529 - -1.6
934,539 + -0.4
934,568 - -0.4
934,624 - PGA1_c09100 0.11 -0.6
934,636 - PGA1_c09100 0.13 -2.8
934,659 - PGA1_c09100 0.15 -1.9
934,659 - PGA1_c09100 0.15 -0.6
934,685 + PGA1_c09100 0.18 -3.5
934,685 + PGA1_c09100 0.18 -0.4
934,693 - PGA1_c09100 0.18 -2.1
934,693 - PGA1_c09100 0.18 -0.9
934,693 - PGA1_c09100 0.18 -1.6
934,710 + PGA1_c09100 0.20 -1.4
934,719 - PGA1_c09100 0.21 -2.4
934,846 + PGA1_c09100 0.34 -1.4
934,854 - PGA1_c09100 0.35 -2.7
934,854 - PGA1_c09100 0.35 -0.8
934,903 + PGA1_c09100 0.40 -1.6
934,943 + PGA1_c09100 0.44 -0.3
935,068 - PGA1_c09100 0.57 -1.0
935,081 + PGA1_c09100 0.58 -1.1
935,089 - PGA1_c09100 0.59 -0.6
935,139 + PGA1_c09100 0.64 -1.9
935,147 - PGA1_c09100 0.65 -2.6
935,147 - PGA1_c09100 0.65 -1.2
935,172 + PGA1_c09100 0.67 +0.0
935,177 + PGA1_c09100 0.68 -0.9
935,217 - PGA1_c09100 0.72 -1.4
935,228 - PGA1_c09100 0.73 -1.7
935,276 - PGA1_c09100 0.78 -2.0
935,351 + PGA1_c09100 0.86 -0.8
935,429 - +0.0
935,495 + -2.9
935,507 + -0.6
935,515 - -0.5
935,515 - -1.6
935,608 + -1.0
935,651 - -1.2
935,654 + -1.0
935,664 + +1.8
935,664 + -1.2
935,666 + PGA1_c09110 0.10 +0.1
935,682 + PGA1_c09110 0.11 -0.5
935,713 + PGA1_c09110 0.13 -0.5
935,779 + PGA1_c09110 0.16 -1.1
935,779 + PGA1_c09110 0.16 -1.8
935,786 + PGA1_c09110 0.17 -0.6
935,794 - PGA1_c09110 0.17 -2.8
935,950 + PGA1_c09110 0.26 -0.5
935,950 + PGA1_c09110 0.26 -0.5
935,964 - PGA1_c09110 0.27 -0.6
936,044 + PGA1_c09110 0.31 -2.4
936,076 + PGA1_c09110 0.33 -1.0
936,101 - PGA1_c09110 0.34 +0.0
936,107 + PGA1_c09110 0.35 -1.9
936,107 + PGA1_c09110 0.35 -0.7
936,126 + PGA1_c09110 0.36 -1.7
936,142 + PGA1_c09110 0.36 -0.7
936,181 + PGA1_c09110 0.39 -2.2
936,236 - PGA1_c09110 0.42 -2.7
936,349 - PGA1_c09110 0.48 -1.4
936,355 + PGA1_c09110 0.48 -1.6
936,380 - PGA1_c09110 0.50 -0.1
936,407 + PGA1_c09110 0.51 -2.4
936,440 - PGA1_c09110 0.53 -1.5
936,447 - PGA1_c09110 0.53 -2.0
936,565 - PGA1_c09110 0.60 -1.4
936,596 + PGA1_c09110 0.62 -1.4
936,596 + PGA1_c09110 0.62 +0.6
936,596 + PGA1_c09110 0.62 -1.9
936,632 - PGA1_c09110 0.64 -1.0
936,647 + PGA1_c09110 0.65 -2.2
936,664 + PGA1_c09110 0.66 -0.4
936,830 - PGA1_c09110 0.75 +0.2
936,904 + PGA1_c09110 0.79 -1.6
936,906 - PGA1_c09110 0.79 -1.6
936,912 - PGA1_c09110 0.79 -1.2
936,912 - PGA1_c09110 0.79 -2.6
936,913 + PGA1_c09110 0.79 -2.5
936,913 + PGA1_c09110 0.79 +0.4
936,921 - PGA1_c09110 0.80 -1.4
936,937 + PGA1_c09110 0.81 -1.4
937,010 - PGA1_c09110 0.85 -2.0
937,050 + PGA1_c09110 0.87 -1.0
937,079 - PGA1_c09110 0.89 -0.1
937,104 + PGA1_c09110 0.90 -1.2
937,130 - -0.4
937,130 - -2.5
937,132 + -0.7
937,147 - -2.0
937,161 + -0.5
937,168 - -0.6
937,233 + -1.4
937,292 - -0.4
937,294 + -1.5
937,301 + -0.4
937,361 + -2.0
937,369 - -2.4
937,382 + -1.2
937,425 + -2.6
937,450 + -2.0
937,458 - -1.2
937,524 - -1.9
937,524 - -1.2
937,530 + -1.1
937,530 + -0.2
937,537 + -1.6
937,537 + -1.8
937,537 + -3.4
937,537 + -0.4
937,537 + -2.0
937,542 + -0.3
937,545 - -1.0
937,623 + -0.1
937,647 + -0.4
937,655 + -1.8
937,655 + +0.4
937,663 - +0.3
937,724 - +0.5
937,739 - -0.3
937,762 + -0.1
937,772 + +1.4
937,921 + PGA1_c09120 0.18 -0.8
937,929 - PGA1_c09120 0.19 +1.3
937,963 + PGA1_c09120 0.22 +0.6
937,981 + PGA1_c09120 0.24 -0.2
938,067 + PGA1_c09120 0.33 +1.5
938,139 + PGA1_c09120 0.40 -0.6
938,145 + PGA1_c09120 0.41 -0.2
938,145 + PGA1_c09120 0.41 +0.5
938,165 + PGA1_c09120 0.43 +0.6
938,190 - PGA1_c09120 0.46 +0.6
938,241 - PGA1_c09120 0.51 -1.2
938,262 + PGA1_c09120 0.53 -1.4

Or see this region's nucleotide sequence