Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08770

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08760 and PGA1_c08770 overlap by 8 nucleotidesPGA1_c08770 and PGA1_c08780 are separated by 38 nucleotidesPGA1_c08780 and PGA1_c08790 are separated by 1 nucleotides PGA1_c08760: PGA1_c08760 - sarcosine oxidase subunit alpha, at 903,382 to 906,303 _c08760 PGA1_c08770: PGA1_c08770 - putative sarcosine oxidase, subunit gamma, at 906,296 to 906,841 _c08770 PGA1_c08780: PGA1_c08780 - hypothetical protein, at 906,880 to 907,218 _c08780 PGA1_c08790: PGA1_c08790 - DNA primase DnaG, at 907,220 to 909,469 _c08790 Position (kb) 906 907Strain fitness (log2 ratio) -2 -1 0 1at 905.299 kb on + strand, within PGA1_c08760at 905.318 kb on - strand, within PGA1_c08760at 905.382 kb on + strand, within PGA1_c08760at 905.382 kb on + strand, within PGA1_c08760at 905.382 kb on + strand, within PGA1_c08760at 905.382 kb on + strand, within PGA1_c08760at 905.382 kb on + strand, within PGA1_c08760at 905.382 kb on + strand, within PGA1_c08760at 905.390 kb on - strand, within PGA1_c08760at 905.390 kb on - strand, within PGA1_c08760at 905.448 kb on - strand, within PGA1_c08760at 905.453 kb on + strand, within PGA1_c08760at 905.484 kb on + strand, within PGA1_c08760at 905.507 kb on + strand, within PGA1_c08760at 905.521 kb on + strand, within PGA1_c08760at 905.620 kb on - strand, within PGA1_c08760at 905.631 kb on + strand, within PGA1_c08760at 905.631 kb on + strand, within PGA1_c08760at 905.631 kb on + strand, within PGA1_c08760at 905.631 kb on + strand, within PGA1_c08760at 905.639 kb on - strand, within PGA1_c08760at 905.639 kb on - strand, within PGA1_c08760at 905.711 kb on - strand, within PGA1_c08760at 905.753 kb on + strand, within PGA1_c08760at 905.814 kb on + strand, within PGA1_c08760at 905.821 kb on + strand, within PGA1_c08760at 905.821 kb on + strand, within PGA1_c08760at 905.829 kb on - strand, within PGA1_c08760at 905.843 kb on + strand, within PGA1_c08760at 905.843 kb on + strand, within PGA1_c08760at 905.931 kb on - strand, within PGA1_c08760at 905.953 kb on + strand, within PGA1_c08760at 905.957 kb on + strand, within PGA1_c08760at 905.958 kb on + strand, within PGA1_c08760at 905.961 kb on - strand, within PGA1_c08760at 906.035 kb on - strandat 906.059 kb on - strandat 906.109 kb on + strandat 906.140 kb on + strandat 906.172 kb on - strandat 906.174 kb on + strandat 906.174 kb on + strandat 906.174 kb on + strandat 906.174 kb on + strandat 906.174 kb on + strandat 906.174 kb on + strandat 906.174 kb on + strandat 906.174 kb on + strandat 906.182 kb on - strandat 906.182 kb on - strandat 906.182 kb on - strandat 906.182 kb on - strandat 906.182 kb on - strandat 906.182 kb on - strandat 906.182 kb on - strandat 906.182 kb on - strandat 906.182 kb on - strandat 906.194 kb on + strandat 906.219 kb on + strandat 906.223 kb on - strandat 906.225 kb on - strandat 906.240 kb on - strandat 906.269 kb on + strandat 906.436 kb on + strand, within PGA1_c08770at 906.452 kb on + strand, within PGA1_c08770at 906.522 kb on + strand, within PGA1_c08770at 906.530 kb on - strand, within PGA1_c08770at 906.551 kb on + strand, within PGA1_c08770at 906.555 kb on - strand, within PGA1_c08770at 906.570 kb on + strand, within PGA1_c08770at 906.613 kb on + strand, within PGA1_c08770at 906.623 kb on + strand, within PGA1_c08770at 906.630 kb on + strand, within PGA1_c08770at 906.679 kb on + strand, within PGA1_c08770at 906.688 kb on + strand, within PGA1_c08770at 906.886 kb on - strandat 906.887 kb on + strandat 906.969 kb on + strand, within PGA1_c08780at 907.060 kb on + strand, within PGA1_c08780

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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905,299 + PGA1_c08760 0.66 +0.6
905,318 - PGA1_c08760 0.66 +0.6
905,382 + PGA1_c08760 0.68 +0.3
905,382 + PGA1_c08760 0.68 -0.4
905,382 + PGA1_c08760 0.68 +0.8
905,382 + PGA1_c08760 0.68 +0.4
905,382 + PGA1_c08760 0.68 +0.8
905,382 + PGA1_c08760 0.68 +0.5
905,390 - PGA1_c08760 0.69 +1.2
905,390 - PGA1_c08760 0.69 -0.1
905,448 - PGA1_c08760 0.71 +0.4
905,453 + PGA1_c08760 0.71 -1.0
905,484 + PGA1_c08760 0.72 -1.3
905,507 + PGA1_c08760 0.73 +0.6
905,521 + PGA1_c08760 0.73 +0.7
905,620 - PGA1_c08760 0.77 -1.0
905,631 + PGA1_c08760 0.77 -0.0
905,631 + PGA1_c08760 0.77 +0.4
905,631 + PGA1_c08760 0.77 +0.5
905,631 + PGA1_c08760 0.77 -0.4
905,639 - PGA1_c08760 0.77 +0.9
905,639 - PGA1_c08760 0.77 -0.7
905,711 - PGA1_c08760 0.80 +0.9
905,753 + PGA1_c08760 0.81 -1.2
905,814 + PGA1_c08760 0.83 -2.2
905,821 + PGA1_c08760 0.83 +0.3
905,821 + PGA1_c08760 0.83 +1.6
905,829 - PGA1_c08760 0.84 +0.6
905,843 + PGA1_c08760 0.84 +0.6
905,843 + PGA1_c08760 0.84 +0.5
905,931 - PGA1_c08760 0.87 -0.4
905,953 + PGA1_c08760 0.88 +0.6
905,957 + PGA1_c08760 0.88 -0.7
905,958 + PGA1_c08760 0.88 +0.0
905,961 - PGA1_c08760 0.88 -0.5
906,035 - -0.1
906,059 - -0.8
906,109 + +0.2
906,140 + +0.0
906,172 - -1.2
906,174 + +0.9
906,174 + +0.6
906,174 + +0.2
906,174 + +0.8
906,174 + +0.4
906,174 + +0.2
906,174 + +0.2
906,174 + +0.6
906,182 - -0.8
906,182 - -0.7
906,182 - -0.1
906,182 - +1.0
906,182 - -0.7
906,182 - -1.8
906,182 - -1.0
906,182 - +0.2
906,182 - -1.4
906,194 + +0.4
906,219 + +0.3
906,223 - -1.5
906,225 - -0.4
906,240 - +1.2
906,269 + -1.2
906,436 + PGA1_c08770 0.26 -0.1
906,452 + PGA1_c08770 0.29 -1.4
906,522 + PGA1_c08770 0.41 -0.1
906,530 - PGA1_c08770 0.43 +0.0
906,551 + PGA1_c08770 0.47 +0.1
906,555 - PGA1_c08770 0.47 -0.5
906,570 + PGA1_c08770 0.50 +0.3
906,613 + PGA1_c08770 0.58 -1.2
906,623 + PGA1_c08770 0.60 +0.4
906,630 + PGA1_c08770 0.61 +1.1
906,679 + PGA1_c08770 0.70 -0.6
906,688 + PGA1_c08770 0.72 +0.5
906,886 - -2.0
906,887 + -1.7
906,969 + PGA1_c08780 0.26 -1.5
907,060 + PGA1_c08780 0.53 -1.1

Or see this region's nucleotide sequence