Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05440 and PGA1_c05450 are separated by 147 nucleotides PGA1_c05450 and PGA1_c05460 are separated by 197 nucleotides
PGA1_c05440: PGA1_c05440 - surface antigen-like protein, at 554,505 to 556,448
_c05440
PGA1_c05450: PGA1_c05450 - Predicted membrane protein, at 556,596 to 557,828
_c05450
PGA1_c05460: PGA1_c05460 - transcriptional regulator, LysR family, at 558,026 to 559,000
_c05460
Position (kb) 556
557
558 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 555.606 kb on + strand, within PGA1_c05440 at 555.672 kb on - strand, within PGA1_c05440 at 555.675 kb on + strand, within PGA1_c05440 at 555.780 kb on - strand, within PGA1_c05440 at 555.784 kb on + strand, within PGA1_c05440 at 555.791 kb on + strand, within PGA1_c05440 at 555.842 kb on + strand, within PGA1_c05440 at 555.870 kb on + strand, within PGA1_c05440 at 556.035 kb on + strand, within PGA1_c05440 at 556.083 kb on - strand, within PGA1_c05440 at 556.093 kb on - strand, within PGA1_c05440 at 556.145 kb on - strand, within PGA1_c05440 at 556.338 kb on - strand at 556.355 kb on + strand at 556.356 kb on + strand at 556.428 kb on - strand at 556.441 kb on - strand at 556.441 kb on - strand at 556.445 kb on + strand at 556.445 kb on + strand at 556.469 kb on + strand at 556.477 kb on - strand at 556.594 kb on + strand at 556.599 kb on + strand at 556.602 kb on - strand at 556.602 kb on - strand at 556.704 kb on + strand at 556.707 kb on - strand at 556.712 kb on - strand at 556.755 kb on + strand, within PGA1_c05450 at 556.756 kb on - strand, within PGA1_c05450 at 556.787 kb on + strand, within PGA1_c05450 at 556.804 kb on + strand, within PGA1_c05450 at 556.812 kb on - strand, within PGA1_c05450 at 556.838 kb on + strand, within PGA1_c05450 at 556.846 kb on + strand, within PGA1_c05450 at 556.846 kb on - strand, within PGA1_c05450 at 556.846 kb on - strand, within PGA1_c05450 at 556.846 kb on - strand, within PGA1_c05450 at 556.846 kb on - strand, within PGA1_c05450 at 556.846 kb on - strand, within PGA1_c05450 at 556.860 kb on - strand, within PGA1_c05450 at 556.876 kb on - strand, within PGA1_c05450 at 556.876 kb on - strand, within PGA1_c05450 at 556.881 kb on - strand, within PGA1_c05450 at 556.916 kb on + strand, within PGA1_c05450 at 556.936 kb on - strand, within PGA1_c05450 at 556.956 kb on - strand, within PGA1_c05450 at 557.020 kb on - strand, within PGA1_c05450 at 557.078 kb on - strand, within PGA1_c05450 at 557.132 kb on + strand, within PGA1_c05450 at 557.255 kb on + strand, within PGA1_c05450 at 557.271 kb on - strand, within PGA1_c05450 at 557.285 kb on - strand, within PGA1_c05450 at 557.314 kb on + strand, within PGA1_c05450 at 557.340 kb on - strand, within PGA1_c05450 at 557.378 kb on - strand, within PGA1_c05450 at 557.396 kb on + strand, within PGA1_c05450 at 557.419 kb on - strand, within PGA1_c05450 at 557.457 kb on - strand, within PGA1_c05450 at 557.472 kb on - strand, within PGA1_c05450 at 557.485 kb on + strand, within PGA1_c05450 at 557.485 kb on + strand, within PGA1_c05450 at 557.485 kb on + strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.493 kb on - strand, within PGA1_c05450 at 557.510 kb on + strand, within PGA1_c05450 at 557.515 kb on + strand, within PGA1_c05450 at 557.518 kb on - strand, within PGA1_c05450 at 557.518 kb on - strand, within PGA1_c05450 at 557.518 kb on - strand, within PGA1_c05450 at 557.523 kb on - strand, within PGA1_c05450 at 557.552 kb on - strand, within PGA1_c05450 at 557.558 kb on + strand, within PGA1_c05450 at 557.563 kb on - strand, within PGA1_c05450 at 557.597 kb on - strand, within PGA1_c05450 at 557.701 kb on + strand, within PGA1_c05450 at 557.811 kb on - strand at 557.862 kb on + strand at 557.877 kb on + strand at 557.917 kb on + strand at 557.982 kb on + strand at 557.988 kb on - strand at 558.023 kb on + strand at 558.024 kb on - strand at 558.044 kb on + strand at 558.051 kb on + strand at 558.059 kb on - strand at 558.071 kb on - strand at 558.101 kb on - strand at 558.123 kb on + strand at 558.257 kb on - strand, within PGA1_c05460 at 558.257 kb on - strand, within PGA1_c05460 at 558.273 kb on - strand, within PGA1_c05460 at 558.320 kb on + strand, within PGA1_c05460 at 558.320 kb on + strand, within PGA1_c05460 at 558.451 kb on - strand, within PGA1_c05460 at 558.520 kb on + strand, within PGA1_c05460 at 558.525 kb on - strand, within PGA1_c05460 at 558.587 kb on + strand, within PGA1_c05460 at 558.587 kb on + strand, within PGA1_c05460 at 558.595 kb on - strand, within PGA1_c05460 at 558.597 kb on + strand, within PGA1_c05460 at 558.597 kb on + strand, within PGA1_c05460 at 558.605 kb on - strand, within PGA1_c05460 at 558.605 kb on - strand, within PGA1_c05460 at 558.641 kb on + strand, within PGA1_c05460 at 558.641 kb on + strand, within PGA1_c05460 at 558.651 kb on + strand, within PGA1_c05460 at 558.654 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.674 kb on - strand, within PGA1_c05460 at 558.731 kb on + strand, within PGA1_c05460
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 555,606 + PGA1_c05440 0.57 +1.5 555,672 - PGA1_c05440 0.60 -0.7 555,675 + PGA1_c05440 0.60 +0.3 555,780 - PGA1_c05440 0.66 -0.7 555,784 + PGA1_c05440 0.66 -0.8 555,791 + PGA1_c05440 0.66 -0.5 555,842 + PGA1_c05440 0.69 -0.5 555,870 + PGA1_c05440 0.70 -1.1 556,035 + PGA1_c05440 0.79 -0.1 556,083 - PGA1_c05440 0.81 +0.1 556,093 - PGA1_c05440 0.82 +1.2 556,145 - PGA1_c05440 0.84 -1.6 556,338 - -1.3 556,355 + -0.4 556,356 + +0.2 556,428 - -0.2 556,441 - +0.1 556,441 - -0.0 556,445 + +0.3 556,445 + -1.6 556,469 + +0.5 556,477 - -0.3 556,594 + +1.7 556,599 + +0.3 556,602 - +1.2 556,602 - -0.4 556,704 + -0.5 556,707 - -3.1 556,712 - -0.9 556,755 + PGA1_c05450 0.13 -3.7 556,756 - PGA1_c05450 0.13 -0.9 556,787 + PGA1_c05450 0.15 -1.4 556,804 + PGA1_c05450 0.17 -1.8 556,812 - PGA1_c05450 0.18 -2.3 556,838 + PGA1_c05450 0.20 -0.6 556,846 + PGA1_c05450 0.20 -1.1 556,846 - PGA1_c05450 0.20 +0.1 556,846 - PGA1_c05450 0.20 -0.3 556,846 - PGA1_c05450 0.20 -1.7 556,846 - PGA1_c05450 0.20 -0.9 556,846 - PGA1_c05450 0.20 -2.9 556,860 - PGA1_c05450 0.21 -1.3 556,876 - PGA1_c05450 0.23 +0.3 556,876 - PGA1_c05450 0.23 -0.2 556,881 - PGA1_c05450 0.23 -1.9 556,916 + PGA1_c05450 0.26 -2.5 556,936 - PGA1_c05450 0.28 -2.1 556,956 - PGA1_c05450 0.29 -0.4 557,020 - PGA1_c05450 0.34 -0.9 557,078 - PGA1_c05450 0.39 -0.8 557,132 + PGA1_c05450 0.43 -1.5 557,255 + PGA1_c05450 0.53 -2.1 557,271 - PGA1_c05450 0.55 -3.2 557,285 - PGA1_c05450 0.56 +0.7 557,314 + PGA1_c05450 0.58 -0.7 557,340 - PGA1_c05450 0.60 -2.2 557,378 - PGA1_c05450 0.63 -0.3 557,396 + PGA1_c05450 0.65 -1.4 557,419 - PGA1_c05450 0.67 -1.3 557,457 - PGA1_c05450 0.70 -0.5 557,472 - PGA1_c05450 0.71 -0.3 557,485 + PGA1_c05450 0.72 -2.1 557,485 + PGA1_c05450 0.72 +2.0 557,485 + PGA1_c05450 0.72 -0.9 557,493 - PGA1_c05450 0.73 -1.5 557,493 - PGA1_c05450 0.73 -1.1 557,493 - PGA1_c05450 0.73 -2.8 557,493 - PGA1_c05450 0.73 -0.0 557,510 + PGA1_c05450 0.74 -0.7 557,515 + PGA1_c05450 0.75 -1.7 557,518 - PGA1_c05450 0.75 -2.3 557,518 - PGA1_c05450 0.75 -1.9 557,518 - PGA1_c05450 0.75 -1.7 557,523 - PGA1_c05450 0.75 -1.8 557,552 - PGA1_c05450 0.78 -2.6 557,558 + PGA1_c05450 0.78 -2.1 557,563 - PGA1_c05450 0.78 -1.0 557,597 - PGA1_c05450 0.81 -1.6 557,701 + PGA1_c05450 0.90 +1.7 557,811 - -0.9 557,862 + -0.4 557,877 + -1.3 557,917 + -1.7 557,982 + -2.3 557,988 - -1.0 558,023 + +0.2 558,024 - -1.3 558,044 + -1.0 558,051 + -0.9 558,059 - -0.5 558,071 - -2.2 558,101 - +0.4 558,123 + -1.3 558,257 - PGA1_c05460 0.24 -1.1 558,257 - PGA1_c05460 0.24 -0.4 558,273 - PGA1_c05460 0.25 +0.1 558,320 + PGA1_c05460 0.30 -0.3 558,320 + PGA1_c05460 0.30 -0.9 558,451 - PGA1_c05460 0.44 -1.7 558,520 + PGA1_c05460 0.51 -0.0 558,525 - PGA1_c05460 0.51 -3.9 558,587 + PGA1_c05460 0.58 -2.9 558,587 + PGA1_c05460 0.58 -0.3 558,595 - PGA1_c05460 0.58 -0.3 558,597 + PGA1_c05460 0.59 -1.1 558,597 + PGA1_c05460 0.59 -1.9 558,605 - PGA1_c05460 0.59 -0.6 558,605 - PGA1_c05460 0.59 -3.5 558,641 + PGA1_c05460 0.63 -1.6 558,641 + PGA1_c05460 0.63 -1.2 558,651 + PGA1_c05460 0.64 -2.6 558,654 - PGA1_c05460 0.64 -2.4 558,659 - PGA1_c05460 0.65 -0.6 558,659 - PGA1_c05460 0.65 -2.5 558,674 - PGA1_c05460 0.66 -0.1 558,731 + PGA1_c05460 0.72 -2.1
Or see this region's nucleotide sequence