Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05420

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05410 and PGA1_c05420 are separated by 172 nucleotidesPGA1_c05420 and PGA1_c05430 are separated by 24 nucleotides PGA1_c05410: PGA1_c05410 - hypothetical protein, at 548,586 to 549,695 _c05410 PGA1_c05420: PGA1_c05420 - glucokinase (EC 2.7.1.2) (from data), at 549,868 to 550,818 _c05420 PGA1_c05430: PGA1_c05430 - Uncharacterized protein conserved in bacteria, at 550,843 to 554,508 _c05430 Position (kb) 549 550 551Strain fitness (log2 ratio) -2 -1 0 1at 548.876 kb on + strand, within PGA1_c05410at 548.944 kb on - strand, within PGA1_c05410at 548.973 kb on - strand, within PGA1_c05410at 548.989 kb on + strand, within PGA1_c05410at 548.989 kb on + strand, within PGA1_c05410at 549.059 kb on - strand, within PGA1_c05410at 549.059 kb on - strand, within PGA1_c05410at 549.069 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.113 kb on - strand, within PGA1_c05410at 549.170 kb on + strand, within PGA1_c05410at 549.185 kb on + strand, within PGA1_c05410at 549.212 kb on + strand, within PGA1_c05410at 549.216 kb on + strand, within PGA1_c05410at 549.218 kb on + strand, within PGA1_c05410at 549.224 kb on - strand, within PGA1_c05410at 549.291 kb on - strand, within PGA1_c05410at 549.333 kb on + strand, within PGA1_c05410at 549.336 kb on - strand, within PGA1_c05410at 549.341 kb on - strand, within PGA1_c05410at 549.351 kb on - strand, within PGA1_c05410at 549.439 kb on - strand, within PGA1_c05410at 549.444 kb on + strand, within PGA1_c05410at 549.464 kb on - strand, within PGA1_c05410at 549.469 kb on - strand, within PGA1_c05410at 549.543 kb on - strand, within PGA1_c05410at 549.584 kb on - strand, within PGA1_c05410at 549.590 kb on - strandat 549.648 kb on + strandat 549.654 kb on + strandat 549.656 kb on - strandat 549.659 kb on + strandat 549.659 kb on + strandat 549.659 kb on + strandat 549.659 kb on + strandat 549.667 kb on - strandat 549.688 kb on - strandat 549.714 kb on + strandat 549.714 kb on + strandat 549.714 kb on + strandat 549.714 kb on + strandat 549.714 kb on + strandat 549.714 kb on + strandat 549.722 kb on - strandat 549.722 kb on - strandat 549.724 kb on + strandat 549.756 kb on - strandat 549.763 kb on - strandat 549.832 kb on - strandat 550.121 kb on - strand, within PGA1_c05420at 550.126 kb on - strand, within PGA1_c05420at 550.235 kb on - strand, within PGA1_c05420at 550.361 kb on + strand, within PGA1_c05420at 550.677 kb on - strand, within PGA1_c05420at 550.834 kb on - strandat 550.897 kb on - strandat 550.897 kb on - strandat 550.917 kb on - strandat 550.979 kb on + strandat 550.992 kb on - strandat 551.032 kb on - strandat 551.148 kb on + strandat 551.149 kb on + strandat 551.149 kb on + strandat 551.210 kb on - strand, within PGA1_c05430at 551.267 kb on - strand, within PGA1_c05430at 551.274 kb on - strand, within PGA1_c05430at 551.292 kb on - strand, within PGA1_c05430at 551.405 kb on + strand, within PGA1_c05430at 551.408 kb on - strand, within PGA1_c05430at 551.518 kb on + strand, within PGA1_c05430at 551.672 kb on - strand, within PGA1_c05430at 551.736 kb on + strand, within PGA1_c05430at 551.744 kb on - strand, within PGA1_c05430

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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548,876 + PGA1_c05410 0.26 +0.1
548,944 - PGA1_c05410 0.32 +0.7
548,973 - PGA1_c05410 0.35 -0.3
548,989 + PGA1_c05410 0.36 -2.6
548,989 + PGA1_c05410 0.36 -1.3
549,059 - PGA1_c05410 0.43 -0.1
549,059 - PGA1_c05410 0.43 -0.3
549,069 - PGA1_c05410 0.44 +0.9
549,108 - PGA1_c05410 0.47 +0.3
549,108 - PGA1_c05410 0.47 +1.1
549,108 - PGA1_c05410 0.47 +0.3
549,113 - PGA1_c05410 0.47 +1.1
549,170 + PGA1_c05410 0.53 -0.3
549,185 + PGA1_c05410 0.54 +0.4
549,212 + PGA1_c05410 0.56 -0.2
549,216 + PGA1_c05410 0.57 +0.2
549,218 + PGA1_c05410 0.57 -2.3
549,224 - PGA1_c05410 0.57 +1.0
549,291 - PGA1_c05410 0.64 -0.8
549,333 + PGA1_c05410 0.67 +1.3
549,336 - PGA1_c05410 0.68 +0.9
549,341 - PGA1_c05410 0.68 +0.6
549,351 - PGA1_c05410 0.69 -0.7
549,439 - PGA1_c05410 0.77 -0.3
549,444 + PGA1_c05410 0.77 -0.2
549,464 - PGA1_c05410 0.79 -0.7
549,469 - PGA1_c05410 0.80 +0.2
549,543 - PGA1_c05410 0.86 +0.4
549,584 - PGA1_c05410 0.90 -0.3
549,590 - +1.3
549,648 + -1.0
549,654 + +0.4
549,656 - -1.0
549,659 + +0.3
549,659 + +0.3
549,659 + -0.3
549,659 + +0.1
549,667 - +0.1
549,688 - +0.0
549,714 + +0.4
549,714 + +0.6
549,714 + +0.5
549,714 + -0.7
549,714 + -0.6
549,714 + +0.4
549,722 - +1.6
549,722 - -0.2
549,724 + +1.1
549,756 - -0.2
549,763 - +0.7
549,832 - -0.5
550,121 - PGA1_c05420 0.27 -2.3
550,126 - PGA1_c05420 0.27 -0.9
550,235 - PGA1_c05420 0.39 -1.6
550,361 + PGA1_c05420 0.52 +0.1
550,677 - PGA1_c05420 0.85 -0.6
550,834 - +0.8
550,897 - -1.5
550,897 - -0.7
550,917 - +1.4
550,979 + +1.4
550,992 - +1.0
551,032 - -0.4
551,148 + -0.0
551,149 + +0.7
551,149 + +0.2
551,210 - PGA1_c05430 0.10 +1.3
551,267 - PGA1_c05430 0.12 +1.1
551,274 - PGA1_c05430 0.12 -0.3
551,292 - PGA1_c05430 0.12 -0.4
551,405 + PGA1_c05430 0.15 -0.7
551,408 - PGA1_c05430 0.15 -0.3
551,518 + PGA1_c05430 0.18 +0.9
551,672 - PGA1_c05430 0.23 -0.0
551,736 + PGA1_c05430 0.24 -0.7
551,744 - PGA1_c05430 0.25 -0.5

Or see this region's nucleotide sequence