Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02330 and PGA1_262p02340 overlap by 4 nucleotides PGA1_262p02340 and PGA1_262p02350 are separated by 104 nucleotides PGA1_262p02350 and PGA1_262p02360 are separated by 40 nucleotides PGA1_262p02360 and PGA1_262p02370 are separated by 9 nucleotides
PGA1_262p02330: PGA1_262p02330 - putative aspartate aminotransferase, at 255,447 to 256,634
_262p02330
PGA1_262p02340: PGA1_262p02340 - putative transcriptional regulator, TetR family, at 256,631 to 257,278
_262p02340
PGA1_262p02350: PGA1_262p02350 - histidine transport ATP-binding protein HisP, at 257,383 to 258,228
_262p02350
PGA1_262p02360: PGA1_262p02360 - putative histidine-binding periplasmic protein, at 258,269 to 259,048
_262p02360
PGA1_262p02370: PGA1_262p02370 - putative histidine transport system permease protein HisQ, at 259,058 to 259,810
_262p02370
Position (kb) 257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 256.432 kb on - strand, within PGA1_262p02330 at 256.490 kb on + strand, within PGA1_262p02330 at 256.509 kb on + strand, within PGA1_262p02330 at 256.575 kb on - strand at 256.585 kb on - strand at 256.609 kb on + strand at 256.644 kb on + strand at 256.652 kb on - strand at 256.666 kb on - strand at 257.175 kb on - strand, within PGA1_262p02340 at 257.287 kb on + strand at 257.295 kb on - strand at 257.300 kb on + strand at 257.445 kb on - strand at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.570 kb on - strand, within PGA1_262p02350 at 257.619 kb on - strand, within PGA1_262p02350 at 257.676 kb on - strand, within PGA1_262p02350 at 257.699 kb on + strand, within PGA1_262p02350 at 257.737 kb on + strand, within PGA1_262p02350 at 257.742 kb on + strand, within PGA1_262p02350 at 257.745 kb on - strand, within PGA1_262p02350 at 257.852 kb on - strand, within PGA1_262p02350 at 257.852 kb on - strand, within PGA1_262p02350 at 258.018 kb on + strand, within PGA1_262p02350 at 258.197 kb on + strand at 258.439 kb on + strand, within PGA1_262p02360 at 258.439 kb on + strand, within PGA1_262p02360 at 258.477 kb on - strand, within PGA1_262p02360 at 258.501 kb on + strand, within PGA1_262p02360 at 258.691 kb on + strand, within PGA1_262p02360 at 258.761 kb on - strand, within PGA1_262p02360 at 258.795 kb on + strand, within PGA1_262p02360 at 258.876 kb on - strand, within PGA1_262p02360 at 258.877 kb on - strand, within PGA1_262p02360 at 258.931 kb on - strand, within PGA1_262p02360 at 259.041 kb on - strand at 259.046 kb on - strand at 259.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 256,432 - PGA1_262p02330 0.83 -0.2 256,490 + PGA1_262p02330 0.88 -0.2 256,509 + PGA1_262p02330 0.89 -0.6 256,575 - -1.2 256,585 - -0.3 256,609 + -1.9 256,644 + -0.4 256,652 - -0.7 256,666 - +0.1 257,175 - PGA1_262p02340 0.84 -1.3 257,287 + -0.3 257,295 - -0.4 257,300 + -0.8 257,445 - -1.3 257,532 + PGA1_262p02350 0.18 +0.4 257,532 + PGA1_262p02350 0.18 -0.8 257,532 + PGA1_262p02350 0.18 -0.9 257,540 + PGA1_262p02350 0.19 -0.8 257,540 + PGA1_262p02350 0.19 -2.1 257,570 - PGA1_262p02350 0.22 -0.0 257,619 - PGA1_262p02350 0.28 -0.6 257,676 - PGA1_262p02350 0.35 +0.1 257,699 + PGA1_262p02350 0.37 -0.9 257,737 + PGA1_262p02350 0.42 -0.4 257,742 + PGA1_262p02350 0.42 -0.2 257,745 - PGA1_262p02350 0.43 -0.6 257,852 - PGA1_262p02350 0.55 -0.3 257,852 - PGA1_262p02350 0.55 -0.5 258,018 + PGA1_262p02350 0.75 -0.9 258,197 + -0.3 258,439 + PGA1_262p02360 0.22 -0.2 258,439 + PGA1_262p02360 0.22 -0.7 258,477 - PGA1_262p02360 0.27 +0.2 258,501 + PGA1_262p02360 0.30 -0.2 258,691 + PGA1_262p02360 0.54 -1.2 258,761 - PGA1_262p02360 0.63 -1.9 258,795 + PGA1_262p02360 0.67 -0.0 258,876 - PGA1_262p02360 0.78 -0.7 258,877 - PGA1_262p02360 0.78 +0.3 258,931 - PGA1_262p02360 0.85 -0.7 259,041 - +1.1 259,046 - +0.5 259,095 - +2.3
Or see this region's nucleotide sequence