Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3576 and HP15_3577 are separated by 19 nucleotides HP15_3577 and HP15_3578 are separated by 54 nucleotides
HP15_3576: HP15_3576 - methyl-accepting chemotaxis sensory transducer, at 3,766,563 to 3,768,224
_3576
HP15_3577: HP15_3577 - hypothetical protein, at 3,768,244 to 3,768,375
_3577
HP15_3578: HP15_3578 - acyl-coenzyme A dehydrogenase, at 3,768,430 to 3,770,937
_3578
Position (kb)
3768
3769 Strain fitness (log2 ratio)
-1
0
1
2 at 3767.322 kb on + strand, within HP15_3576 at 3767.330 kb on - strand, within HP15_3576 at 3767.340 kb on + strand, within HP15_3576 at 3767.357 kb on + strand, within HP15_3576 at 3767.381 kb on - strand, within HP15_3576 at 3767.400 kb on - strand, within HP15_3576 at 3767.426 kb on + strand, within HP15_3576 at 3767.433 kb on + strand, within HP15_3576 at 3767.560 kb on - strand, within HP15_3576 at 3767.621 kb on + strand, within HP15_3576 at 3767.649 kb on - strand, within HP15_3576 at 3767.704 kb on - strand, within HP15_3576 at 3767.712 kb on - strand, within HP15_3576 at 3767.731 kb on - strand, within HP15_3576 at 3767.761 kb on + strand, within HP15_3576 at 3767.817 kb on + strand, within HP15_3576 at 3767.895 kb on + strand, within HP15_3576 at 3768.018 kb on + strand, within HP15_3576 at 3768.026 kb on - strand, within HP15_3576 at 3768.097 kb on - strand at 3768.179 kb on - strand at 3768.345 kb on + strand, within HP15_3577 at 3768.353 kb on - strand, within HP15_3577 at 3768.353 kb on - strand, within HP15_3577 at 3768.362 kb on + strand at 3768.392 kb on + strand at 3768.434 kb on + strand at 3768.567 kb on + strand at 3768.588 kb on - strand at 3768.605 kb on - strand at 3768.646 kb on + strand at 3768.646 kb on + strand at 3768.646 kb on + strand at 3768.646 kb on + strand at 3768.654 kb on - strand at 3768.679 kb on + strand at 3768.738 kb on - strand, within HP15_3578 at 3768.774 kb on - strand, within HP15_3578 at 3768.795 kb on - strand, within HP15_3578 at 3768.800 kb on - strand, within HP15_3578 at 3768.802 kb on + strand, within HP15_3578 at 3768.802 kb on + strand, within HP15_3578 at 3768.964 kb on - strand, within HP15_3578 at 3768.974 kb on - strand, within HP15_3578 at 3769.039 kb on + strand, within HP15_3578 at 3769.039 kb on + strand, within HP15_3578 at 3769.069 kb on + strand, within HP15_3578 at 3769.085 kb on - strand, within HP15_3578 at 3769.118 kb on - strand, within HP15_3578 at 3769.286 kb on - strand, within HP15_3578 at 3769.372 kb on - strand, within HP15_3578 at 3769.375 kb on - strand, within HP15_3578 at 3769.375 kb on - strand, within HP15_3578
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 3,767,322 + HP15_3576 0.46 +1.1 3,767,330 - HP15_3576 0.46 +0.8 3,767,340 + HP15_3576 0.47 +0.4 3,767,357 + HP15_3576 0.48 +0.8 3,767,381 - HP15_3576 0.49 +1.1 3,767,400 - HP15_3576 0.50 +0.1 3,767,426 + HP15_3576 0.52 +0.6 3,767,433 + HP15_3576 0.52 -0.9 3,767,560 - HP15_3576 0.60 -0.3 3,767,621 + HP15_3576 0.64 -0.1 3,767,649 - HP15_3576 0.65 +0.1 3,767,704 - HP15_3576 0.69 -0.5 3,767,712 - HP15_3576 0.69 +0.5 3,767,731 - HP15_3576 0.70 +0.6 3,767,761 + HP15_3576 0.72 +0.0 3,767,817 + HP15_3576 0.75 -0.2 3,767,895 + HP15_3576 0.80 -0.9 3,768,018 + HP15_3576 0.88 +1.7 3,768,026 - HP15_3576 0.88 -0.3 3,768,097 - -0.8 3,768,179 - +0.3 3,768,345 + HP15_3577 0.77 +1.1 3,768,353 - HP15_3577 0.83 -0.5 3,768,353 - HP15_3577 0.83 +0.7 3,768,362 + -1.2 3,768,392 + -0.7 3,768,434 + +0.1 3,768,567 + +0.4 3,768,588 - -0.6 3,768,605 - -0.1 3,768,646 + +0.7 3,768,646 + +0.7 3,768,646 + +0.2 3,768,646 + -0.5 3,768,654 - -0.3 3,768,679 + -0.3 3,768,738 - HP15_3578 0.12 +0.7 3,768,774 - HP15_3578 0.14 -0.1 3,768,795 - HP15_3578 0.15 +0.5 3,768,800 - HP15_3578 0.15 -0.0 3,768,802 + HP15_3578 0.15 +1.1 3,768,802 + HP15_3578 0.15 +1.7 3,768,964 - HP15_3578 0.21 -0.2 3,768,974 - HP15_3578 0.22 +2.3 3,769,039 + HP15_3578 0.24 -0.2 3,769,039 + HP15_3578 0.24 +0.8 3,769,069 + HP15_3578 0.25 -1.1 3,769,085 - HP15_3578 0.26 -0.7 3,769,118 - HP15_3578 0.27 +0.4 3,769,286 - HP15_3578 0.34 -0.0 3,769,372 - HP15_3578 0.38 -0.1 3,769,375 - HP15_3578 0.38 +0.3 3,769,375 - HP15_3578 0.38 +0.4
Or see this region's nucleotide sequence