Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00020 and PGA1_262p00030 are separated by 438 nucleotides PGA1_262p00030 and PGA1_262p00040 are separated by 34 nucleotides
PGA1_262p00020: PGA1_262p00020 - plamid partition protein-like protein, at 1,402 to 2,544
_262p00020
PGA1_262p00030: PGA1_262p00030 - Glycosyl hydrolases family 16./Hemolysin-type calcium-binding repeat (2 copies)., at 2,983 to 4,281
_262p00030
PGA1_262p00040: PGA1_262p00040 - sulfotransferase-like protein, at 4,316 to 5,230
_262p00040
Position (kb)
2
3
4
5 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2.652 kb on - strand at 2.806 kb on - strand at 2.843 kb on - strand at 2.845 kb on + strand at 2.853 kb on - strand at 2.853 kb on - strand at 2.857 kb on + strand at 2.857 kb on + strand at 2.857 kb on + strand at 2.934 kb on + strand at 2.935 kb on - strand at 2.942 kb on - strand at 2.942 kb on - strand at 2.974 kb on - strand at 2.974 kb on - strand at 2.974 kb on - strand at 3.031 kb on - strand at 3.127 kb on + strand, within PGA1_262p00030 at 3.237 kb on - strand, within PGA1_262p00030 at 3.361 kb on + strand, within PGA1_262p00030 at 3.609 kb on - strand, within PGA1_262p00030 at 3.618 kb on + strand, within PGA1_262p00030 at 3.659 kb on + strand, within PGA1_262p00030 at 3.802 kb on + strand, within PGA1_262p00030 at 4.082 kb on - strand, within PGA1_262p00030 at 4.232 kb on - strand at 4.234 kb on - strand at 4.387 kb on + strand at 4.449 kb on - strand, within PGA1_262p00040 at 4.626 kb on + strand, within PGA1_262p00040 at 4.634 kb on - strand, within PGA1_262p00040 at 4.643 kb on + strand, within PGA1_262p00040 at 4.682 kb on + strand, within PGA1_262p00040 at 4.764 kb on + strand, within PGA1_262p00040 at 4.788 kb on - strand, within PGA1_262p00040 at 4.905 kb on + strand, within PGA1_262p00040 at 4.983 kb on - strand, within PGA1_262p00040 at 5.019 kb on + strand, within PGA1_262p00040 at 5.101 kb on + strand, within PGA1_262p00040 at 5.172 kb on + strand at 5.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,652 - -1.0 2,806 - -1.0 2,843 - -0.1 2,845 + -0.0 2,853 - +1.0 2,853 - +0.5 2,857 + -1.8 2,857 + -0.5 2,857 + -1.0 2,934 + +0.5 2,935 - -0.6 2,942 - +1.2 2,942 - +0.7 2,974 - +0.3 2,974 - +0.0 2,974 - +0.6 3,031 - -0.4 3,127 + PGA1_262p00030 0.11 -0.4 3,237 - PGA1_262p00030 0.20 -0.3 3,361 + PGA1_262p00030 0.29 +0.3 3,609 - PGA1_262p00030 0.48 -1.6 3,618 + PGA1_262p00030 0.49 -0.9 3,659 + PGA1_262p00030 0.52 -0.7 3,802 + PGA1_262p00030 0.63 -0.7 4,082 - PGA1_262p00030 0.85 +0.7 4,232 - +1.9 4,234 - +0.7 4,387 + -0.5 4,449 - PGA1_262p00040 0.15 +1.7 4,626 + PGA1_262p00040 0.34 -0.3 4,634 - PGA1_262p00040 0.35 +1.9 4,643 + PGA1_262p00040 0.36 -0.6 4,682 + PGA1_262p00040 0.40 -1.2 4,764 + PGA1_262p00040 0.49 +0.1 4,788 - PGA1_262p00040 0.52 +0.3 4,905 + PGA1_262p00040 0.64 +0.1 4,983 - PGA1_262p00040 0.73 +1.9 5,019 + PGA1_262p00040 0.77 -0.2 5,101 + PGA1_262p00040 0.86 -0.6 5,172 + -0.6 5,237 + +0.9
Or see this region's nucleotide sequence