Strain Fitness in Marinobacter adhaerens HP15 around HP15_3453

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3452 and HP15_3453 are separated by 42 nucleotidesHP15_3453 and HP15_3454 are separated by 39 nucleotidesHP15_3454 and HP15_3455 are separated by 161 nucleotides HP15_3452: HP15_3452 - diguanylate cyclase, at 3,631,484 to 3,634,303 _3452 HP15_3453: HP15_3453 - cysteine synthase A, at 3,634,346 to 3,635,317 _3453 HP15_3454: HP15_3454 - OmpA domain protein transmembrane region-containing protein, at 3,635,357 to 3,635,935 _3454 HP15_3455: HP15_3455 - glycerophosphoryl diester phosphodiesterase family protein, at 3,636,097 to 3,637,371 _3455 Position (kb) 3634 3635 3636Strain fitness (log2 ratio) -2 -1 0 1 2at 3633.347 kb on + strand, within HP15_3452at 3633.372 kb on + strand, within HP15_3452at 3633.380 kb on - strand, within HP15_3452at 3633.406 kb on - strand, within HP15_3452at 3633.415 kb on - strand, within HP15_3452at 3633.415 kb on - strand, within HP15_3452at 3633.419 kb on + strand, within HP15_3452at 3633.607 kb on - strand, within HP15_3452at 3633.699 kb on + strand, within HP15_3452at 3633.756 kb on + strand, within HP15_3452at 3633.764 kb on - strand, within HP15_3452at 3633.909 kb on - strand, within HP15_3452at 3633.915 kb on - strand, within HP15_3452at 3633.959 kb on + strand, within HP15_3452at 3634.187 kb on + strandat 3634.307 kb on + strandat 3634.307 kb on + strandat 3634.307 kb on + strandat 3634.315 kb on - strandat 3634.315 kb on - strandat 3634.315 kb on - strandat 3634.371 kb on - strandat 3634.493 kb on - strand, within HP15_3453at 3634.529 kb on - strand, within HP15_3453at 3634.540 kb on - strand, within HP15_3453at 3634.574 kb on + strand, within HP15_3453at 3634.582 kb on - strand, within HP15_3453at 3634.612 kb on + strand, within HP15_3453at 3634.655 kb on + strand, within HP15_3453at 3634.663 kb on - strand, within HP15_3453at 3635.031 kb on - strand, within HP15_3453at 3635.044 kb on - strand, within HP15_3453at 3635.073 kb on + strand, within HP15_3453at 3635.083 kb on + strand, within HP15_3453at 3635.145 kb on - strand, within HP15_3453at 3635.221 kb on + strandat 3635.345 kb on + strandat 3635.345 kb on + strandat 3635.353 kb on - strandat 3635.355 kb on + strandat 3635.530 kb on - strand, within HP15_3454at 3635.632 kb on + strand, within HP15_3454at 3635.655 kb on - strand, within HP15_3454at 3635.655 kb on - strand, within HP15_3454at 3635.833 kb on - strand, within HP15_3454at 3635.855 kb on + strand, within HP15_3454at 3635.863 kb on - strand, within HP15_3454at 3635.863 kb on - strand, within HP15_3454at 3635.863 kb on - strand, within HP15_3454at 3635.868 kb on - strand, within HP15_3454at 3635.900 kb on - strandat 3635.900 kb on - strandat 3635.910 kb on - strandat 3635.953 kb on - strandat 3636.012 kb on - strandat 3636.015 kb on - strandat 3636.051 kb on + strandat 3636.210 kb on + strandat 3636.251 kb on + strand, within HP15_3455at 3636.297 kb on + strand, within HP15_3455

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,633,347 + HP15_3452 0.66 -0.4
3,633,372 + HP15_3452 0.67 +1.5
3,633,380 - HP15_3452 0.67 -2.6
3,633,406 - HP15_3452 0.68 -0.3
3,633,415 - HP15_3452 0.68 -1.2
3,633,415 - HP15_3452 0.68 -0.1
3,633,419 + HP15_3452 0.69 +1.3
3,633,607 - HP15_3452 0.75 -0.2
3,633,699 + HP15_3452 0.79 +1.0
3,633,756 + HP15_3452 0.81 +1.3
3,633,764 - HP15_3452 0.81 -0.1
3,633,909 - HP15_3452 0.86 -0.7
3,633,915 - HP15_3452 0.86 +0.2
3,633,959 + HP15_3452 0.88 -0.3
3,634,187 + +1.9
3,634,307 + +1.0
3,634,307 + +1.8
3,634,307 + +2.6
3,634,315 - -0.4
3,634,315 - +0.4
3,634,315 - -0.1
3,634,371 - -0.9
3,634,493 - HP15_3453 0.15 -0.9
3,634,529 - HP15_3453 0.19 -0.3
3,634,540 - HP15_3453 0.20 -0.6
3,634,574 + HP15_3453 0.23 -0.9
3,634,582 - HP15_3453 0.24 -0.4
3,634,612 + HP15_3453 0.27 -1.1
3,634,655 + HP15_3453 0.32 +0.1
3,634,663 - HP15_3453 0.33 +0.2
3,635,031 - HP15_3453 0.70 -0.9
3,635,044 - HP15_3453 0.72 -0.4
3,635,073 + HP15_3453 0.75 -1.5
3,635,083 + HP15_3453 0.76 -1.5
3,635,145 - HP15_3453 0.82 -0.2
3,635,221 + -0.9
3,635,345 + +0.0
3,635,345 + +0.6
3,635,353 - +1.0
3,635,355 + +0.0
3,635,530 - HP15_3454 0.30 +0.9
3,635,632 + HP15_3454 0.47 -0.1
3,635,655 - HP15_3454 0.51 -1.0
3,635,655 - HP15_3454 0.51 +0.2
3,635,833 - HP15_3454 0.82 -0.6
3,635,855 + HP15_3454 0.86 +0.3
3,635,863 - HP15_3454 0.87 -2.3
3,635,863 - HP15_3454 0.87 +0.4
3,635,863 - HP15_3454 0.87 -1.1
3,635,868 - HP15_3454 0.88 +0.1
3,635,900 - -0.3
3,635,900 - +2.0
3,635,910 - +0.0
3,635,953 - -0.2
3,636,012 - -0.8
3,636,015 - -0.3
3,636,051 + +0.3
3,636,210 + -0.6
3,636,251 + HP15_3455 0.12 -0.7
3,636,297 + HP15_3455 0.16 -0.5

Or see this region's nucleotide sequence