Strain Fitness in Marinobacter adhaerens HP15 around HP15_3420

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3418 and HP15_3419 are separated by 17 nucleotidesHP15_3419 and HP15_3420 are separated by 128 nucleotidesHP15_3420 and HP15_3421 overlap by 4 nucleotides HP15_3418: HP15_3418 - D-amino acid dehydrogenase small subunit, at 3,593,154 to 3,594,425 _3418 HP15_3419: HP15_3419 - polyphosphate kinase 2, predicted, at 3,594,443 to 3,595,276 _3419 HP15_3420: HP15_3420 - hydrolase, TatD family, at 3,595,405 to 3,596,214 _3420 HP15_3421: HP15_3421 - metal-dependent phosphohydrolase, HD subdomain protein, at 3,596,211 to 3,597,419 _3421 Position (kb) 3595 3596 3597Strain fitness (log2 ratio) -2 -1 0 1at 3594.540 kb on + strand, within HP15_3419at 3594.566 kb on + strand, within HP15_3419at 3594.574 kb on - strand, within HP15_3419at 3594.719 kb on + strand, within HP15_3419at 3594.763 kb on + strand, within HP15_3419at 3594.784 kb on + strand, within HP15_3419at 3594.848 kb on + strand, within HP15_3419at 3594.873 kb on + strand, within HP15_3419at 3594.939 kb on - strand, within HP15_3419at 3594.939 kb on - strand, within HP15_3419at 3595.050 kb on + strand, within HP15_3419at 3595.058 kb on - strand, within HP15_3419at 3595.107 kb on + strand, within HP15_3419at 3595.107 kb on + strand, within HP15_3419at 3595.115 kb on - strand, within HP15_3419at 3595.115 kb on - strand, within HP15_3419at 3595.115 kb on - strand, within HP15_3419at 3595.115 kb on - strand, within HP15_3419at 3595.130 kb on - strand, within HP15_3419at 3595.148 kb on + strand, within HP15_3419at 3595.153 kb on + strand, within HP15_3419at 3595.311 kb on - strandat 3595.390 kb on + strandat 3595.398 kb on - strandat 3595.398 kb on - strandat 3595.501 kb on + strand, within HP15_3420at 3595.510 kb on - strand, within HP15_3420at 3595.544 kb on + strand, within HP15_3420at 3595.566 kb on - strand, within HP15_3420at 3595.583 kb on + strand, within HP15_3420at 3595.595 kb on - strand, within HP15_3420at 3595.666 kb on + strand, within HP15_3420at 3595.764 kb on - strand, within HP15_3420at 3595.905 kb on - strand, within HP15_3420at 3595.942 kb on + strand, within HP15_3420at 3595.942 kb on + strand, within HP15_3420at 3595.955 kb on - strand, within HP15_3420at 3596.007 kb on - strand, within HP15_3420at 3596.037 kb on - strand, within HP15_3420at 3596.062 kb on - strand, within HP15_3420at 3596.100 kb on + strand, within HP15_3420at 3596.252 kb on + strandat 3596.292 kb on + strandat 3596.347 kb on + strand, within HP15_3421at 3596.493 kb on - strand, within HP15_3421at 3596.601 kb on + strand, within HP15_3421at 3596.652 kb on + strand, within HP15_3421at 3596.660 kb on - strand, within HP15_3421at 3596.662 kb on + strand, within HP15_3421at 3596.670 kb on - strand, within HP15_3421at 3596.744 kb on + strand, within HP15_3421at 3596.754 kb on - strand, within HP15_3421at 3596.813 kb on + strand, within HP15_3421at 3596.824 kb on - strand, within HP15_3421at 3596.835 kb on - strand, within HP15_3421at 3596.867 kb on - strand, within HP15_3421at 3596.920 kb on - strand, within HP15_3421at 3596.925 kb on - strand, within HP15_3421at 3596.926 kb on + strand, within HP15_3421at 3597.040 kb on - strand, within HP15_3421at 3597.075 kb on - strand, within HP15_3421

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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3,594,540 + HP15_3419 0.12 +0.3
3,594,566 + HP15_3419 0.15 -0.8
3,594,574 - HP15_3419 0.16 -0.2
3,594,719 + HP15_3419 0.33 -2.3
3,594,763 + HP15_3419 0.38 +0.7
3,594,784 + HP15_3419 0.41 +0.2
3,594,848 + HP15_3419 0.49 -2.6
3,594,873 + HP15_3419 0.52 +0.4
3,594,939 - HP15_3419 0.59 +1.3
3,594,939 - HP15_3419 0.59 +0.0
3,595,050 + HP15_3419 0.73 -0.3
3,595,058 - HP15_3419 0.74 +0.0
3,595,107 + HP15_3419 0.80 -0.3
3,595,107 + HP15_3419 0.80 +0.9
3,595,115 - HP15_3419 0.81 -0.2
3,595,115 - HP15_3419 0.81 -0.1
3,595,115 - HP15_3419 0.81 +0.9
3,595,115 - HP15_3419 0.81 +0.0
3,595,130 - HP15_3419 0.82 -0.4
3,595,148 + HP15_3419 0.85 -0.9
3,595,153 + HP15_3419 0.85 +1.6
3,595,311 - -0.3
3,595,390 + -0.5
3,595,398 - -0.7
3,595,398 - -0.9
3,595,501 + HP15_3420 0.12 +0.8
3,595,510 - HP15_3420 0.13 +1.1
3,595,544 + HP15_3420 0.17 -0.4
3,595,566 - HP15_3420 0.20 +0.3
3,595,583 + HP15_3420 0.22 +1.0
3,595,595 - HP15_3420 0.23 +0.9
3,595,666 + HP15_3420 0.32 +0.0
3,595,764 - HP15_3420 0.44 +0.6
3,595,905 - HP15_3420 0.62 +0.2
3,595,942 + HP15_3420 0.66 -0.7
3,595,942 + HP15_3420 0.66 -0.1
3,595,955 - HP15_3420 0.68 +0.0
3,596,007 - HP15_3420 0.74 +0.4
3,596,037 - HP15_3420 0.78 +1.5
3,596,062 - HP15_3420 0.81 -0.8
3,596,100 + HP15_3420 0.86 +0.4
3,596,252 + -1.0
3,596,292 + +1.1
3,596,347 + HP15_3421 0.11 -0.9
3,596,493 - HP15_3421 0.23 -0.5
3,596,601 + HP15_3421 0.32 +0.8
3,596,652 + HP15_3421 0.36 -0.2
3,596,660 - HP15_3421 0.37 +0.0
3,596,662 + HP15_3421 0.37 +0.9
3,596,670 - HP15_3421 0.38 +0.6
3,596,744 + HP15_3421 0.44 +1.3
3,596,754 - HP15_3421 0.45 -0.2
3,596,813 + HP15_3421 0.50 +1.0
3,596,824 - HP15_3421 0.51 -0.4
3,596,835 - HP15_3421 0.52 -0.3
3,596,867 - HP15_3421 0.54 +0.4
3,596,920 - HP15_3421 0.59 -0.2
3,596,925 - HP15_3421 0.59 +0.7
3,596,926 + HP15_3421 0.59 +0.4
3,597,040 - HP15_3421 0.69 +0.3
3,597,075 - HP15_3421 0.71 +0.2

Or see this region's nucleotide sequence