Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3418 and HP15_3419 are separated by 17 nucleotides HP15_3419 and HP15_3420 are separated by 128 nucleotides HP15_3420 and HP15_3421 overlap by 4 nucleotides
HP15_3418: HP15_3418 - D-amino acid dehydrogenase small subunit, at 3,593,154 to 3,594,425
_3418
HP15_3419: HP15_3419 - polyphosphate kinase 2, predicted, at 3,594,443 to 3,595,276
_3419
HP15_3420: HP15_3420 - hydrolase, TatD family, at 3,595,405 to 3,596,214
_3420
HP15_3421: HP15_3421 - metal-dependent phosphohydrolase, HD subdomain protein, at 3,596,211 to 3,597,419
_3421
Position (kb)
3595
3596
3597 Strain fitness (log2 ratio)
-2
-1
0
1 at 3594.540 kb on + strand, within HP15_3419 at 3594.566 kb on + strand, within HP15_3419 at 3594.574 kb on - strand, within HP15_3419 at 3594.719 kb on + strand, within HP15_3419 at 3594.763 kb on + strand, within HP15_3419 at 3594.784 kb on + strand, within HP15_3419 at 3594.848 kb on + strand, within HP15_3419 at 3594.873 kb on + strand, within HP15_3419 at 3594.939 kb on - strand, within HP15_3419 at 3594.939 kb on - strand, within HP15_3419 at 3595.050 kb on + strand, within HP15_3419 at 3595.058 kb on - strand, within HP15_3419 at 3595.107 kb on + strand, within HP15_3419 at 3595.107 kb on + strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.130 kb on - strand, within HP15_3419 at 3595.148 kb on + strand, within HP15_3419 at 3595.153 kb on + strand, within HP15_3419 at 3595.311 kb on - strand at 3595.390 kb on + strand at 3595.398 kb on - strand at 3595.398 kb on - strand at 3595.501 kb on + strand, within HP15_3420 at 3595.510 kb on - strand, within HP15_3420 at 3595.544 kb on + strand, within HP15_3420 at 3595.566 kb on - strand, within HP15_3420 at 3595.583 kb on + strand, within HP15_3420 at 3595.595 kb on - strand, within HP15_3420 at 3595.666 kb on + strand, within HP15_3420 at 3595.764 kb on - strand, within HP15_3420 at 3595.905 kb on - strand, within HP15_3420 at 3595.942 kb on + strand, within HP15_3420 at 3595.942 kb on + strand, within HP15_3420 at 3595.955 kb on - strand, within HP15_3420 at 3596.007 kb on - strand, within HP15_3420 at 3596.037 kb on - strand, within HP15_3420 at 3596.062 kb on - strand, within HP15_3420 at 3596.100 kb on + strand, within HP15_3420 at 3596.252 kb on + strand at 3596.292 kb on + strand at 3596.347 kb on + strand, within HP15_3421 at 3596.493 kb on - strand, within HP15_3421 at 3596.601 kb on + strand, within HP15_3421 at 3596.652 kb on + strand, within HP15_3421 at 3596.660 kb on - strand, within HP15_3421 at 3596.662 kb on + strand, within HP15_3421 at 3596.670 kb on - strand, within HP15_3421 at 3596.744 kb on + strand, within HP15_3421 at 3596.754 kb on - strand, within HP15_3421 at 3596.813 kb on + strand, within HP15_3421 at 3596.824 kb on - strand, within HP15_3421 at 3596.835 kb on - strand, within HP15_3421 at 3596.867 kb on - strand, within HP15_3421 at 3596.920 kb on - strand, within HP15_3421 at 3596.925 kb on - strand, within HP15_3421 at 3596.926 kb on + strand, within HP15_3421 at 3597.040 kb on - strand, within HP15_3421 at 3597.075 kb on - strand, within HP15_3421
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 3,594,540 + HP15_3419 0.12 +0.3 3,594,566 + HP15_3419 0.15 -0.8 3,594,574 - HP15_3419 0.16 -0.2 3,594,719 + HP15_3419 0.33 -2.3 3,594,763 + HP15_3419 0.38 +0.7 3,594,784 + HP15_3419 0.41 +0.2 3,594,848 + HP15_3419 0.49 -2.6 3,594,873 + HP15_3419 0.52 +0.4 3,594,939 - HP15_3419 0.59 +1.3 3,594,939 - HP15_3419 0.59 +0.0 3,595,050 + HP15_3419 0.73 -0.3 3,595,058 - HP15_3419 0.74 +0.0 3,595,107 + HP15_3419 0.80 -0.3 3,595,107 + HP15_3419 0.80 +0.9 3,595,115 - HP15_3419 0.81 -0.2 3,595,115 - HP15_3419 0.81 -0.1 3,595,115 - HP15_3419 0.81 +0.9 3,595,115 - HP15_3419 0.81 +0.0 3,595,130 - HP15_3419 0.82 -0.4 3,595,148 + HP15_3419 0.85 -0.9 3,595,153 + HP15_3419 0.85 +1.6 3,595,311 - -0.3 3,595,390 + -0.5 3,595,398 - -0.7 3,595,398 - -0.9 3,595,501 + HP15_3420 0.12 +0.8 3,595,510 - HP15_3420 0.13 +1.1 3,595,544 + HP15_3420 0.17 -0.4 3,595,566 - HP15_3420 0.20 +0.3 3,595,583 + HP15_3420 0.22 +1.0 3,595,595 - HP15_3420 0.23 +0.9 3,595,666 + HP15_3420 0.32 +0.0 3,595,764 - HP15_3420 0.44 +0.6 3,595,905 - HP15_3420 0.62 +0.2 3,595,942 + HP15_3420 0.66 -0.7 3,595,942 + HP15_3420 0.66 -0.1 3,595,955 - HP15_3420 0.68 +0.0 3,596,007 - HP15_3420 0.74 +0.4 3,596,037 - HP15_3420 0.78 +1.5 3,596,062 - HP15_3420 0.81 -0.8 3,596,100 + HP15_3420 0.86 +0.4 3,596,252 + -1.0 3,596,292 + +1.1 3,596,347 + HP15_3421 0.11 -0.9 3,596,493 - HP15_3421 0.23 -0.5 3,596,601 + HP15_3421 0.32 +0.8 3,596,652 + HP15_3421 0.36 -0.2 3,596,660 - HP15_3421 0.37 +0.0 3,596,662 + HP15_3421 0.37 +0.9 3,596,670 - HP15_3421 0.38 +0.6 3,596,744 + HP15_3421 0.44 +1.3 3,596,754 - HP15_3421 0.45 -0.2 3,596,813 + HP15_3421 0.50 +1.0 3,596,824 - HP15_3421 0.51 -0.4 3,596,835 - HP15_3421 0.52 -0.3 3,596,867 - HP15_3421 0.54 +0.4 3,596,920 - HP15_3421 0.59 -0.2 3,596,925 - HP15_3421 0.59 +0.7 3,596,926 + HP15_3421 0.59 +0.4 3,597,040 - HP15_3421 0.69 +0.3 3,597,075 - HP15_3421 0.71 +0.2
Or see this region's nucleotide sequence