Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c32550 and PGA1_c32560 are separated by 14 nucleotides PGA1_c32560 and PGA1_c32570 are separated by 157 nucleotides
PGA1_c32550: PGA1_c32550 - phenylacetate-CoA ligase PaaK, at 3,412,361 to 3,413,578
_c32550
PGA1_c32560: PGA1_c32560 - high-affinity branched-chain amino acid transport ATP-binding protein, at 3,413,593 to 3,414,429
_c32560
PGA1_c32570: PGA1_c32570 - putative branched-chain amino acid transport system, at 3,414,587 to 3,415,870
_c32570
Position (kb)
3413
3414
3415 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3412.625 kb on - strand, within PGA1_c32550 at 3412.631 kb on + strand, within PGA1_c32550 at 3412.639 kb on - strand, within PGA1_c32550 at 3412.653 kb on - strand, within PGA1_c32550 at 3412.866 kb on - strand, within PGA1_c32550 at 3412.871 kb on + strand, within PGA1_c32550 at 3412.871 kb on + strand, within PGA1_c32550 at 3412.871 kb on + strand, within PGA1_c32550 at 3412.879 kb on - strand, within PGA1_c32550 at 3412.879 kb on - strand, within PGA1_c32550 at 3412.961 kb on - strand, within PGA1_c32550 at 3412.961 kb on - strand, within PGA1_c32550 at 3413.024 kb on + strand, within PGA1_c32550 at 3413.043 kb on - strand, within PGA1_c32550 at 3413.052 kb on + strand, within PGA1_c32550 at 3413.065 kb on - strand, within PGA1_c32550 at 3413.088 kb on + strand, within PGA1_c32550 at 3413.096 kb on - strand, within PGA1_c32550 at 3413.096 kb on - strand, within PGA1_c32550 at 3413.221 kb on + strand, within PGA1_c32550 at 3413.370 kb on + strand, within PGA1_c32550 at 3413.378 kb on - strand, within PGA1_c32550 at 3413.430 kb on + strand, within PGA1_c32550 at 3413.492 kb on - strand at 3413.562 kb on - strand at 3413.586 kb on - strand at 3413.642 kb on + strand at 3413.711 kb on - strand, within PGA1_c32560 at 3413.711 kb on - strand, within PGA1_c32560 at 3413.711 kb on - strand, within PGA1_c32560 at 3413.757 kb on + strand, within PGA1_c32560 at 3413.765 kb on - strand, within PGA1_c32560 at 3413.795 kb on + strand, within PGA1_c32560 at 3413.799 kb on + strand, within PGA1_c32560 at 3413.803 kb on - strand, within PGA1_c32560 at 3413.806 kb on + strand, within PGA1_c32560 at 3413.806 kb on + strand, within PGA1_c32560 at 3413.812 kb on - strand, within PGA1_c32560 at 3413.814 kb on - strand, within PGA1_c32560 at 3413.848 kb on - strand, within PGA1_c32560 at 3414.018 kb on - strand, within PGA1_c32560 at 3414.094 kb on + strand, within PGA1_c32560 at 3414.102 kb on - strand, within PGA1_c32560 at 3414.161 kb on - strand, within PGA1_c32560 at 3414.161 kb on - strand, within PGA1_c32560 at 3414.321 kb on + strand, within PGA1_c32560 at 3414.343 kb on + strand, within PGA1_c32560 at 3414.352 kb on + strand at 3414.449 kb on + strand at 3414.449 kb on + strand at 3414.449 kb on + strand at 3414.449 kb on + strand at 3414.449 kb on + strand at 3414.457 kb on - strand at 3414.457 kb on - strand at 3414.457 kb on - strand at 3414.457 kb on - strand at 3414.457 kb on - strand at 3414.457 kb on - strand at 3414.457 kb on - strand at 3414.457 kb on - strand at 3414.457 kb on - strand at 3414.457 kb on - strand at 3414.457 kb on - strand at 3414.457 kb on - strand at 3414.476 kb on - strand at 3414.476 kb on - strand at 3414.479 kb on + strand at 3414.487 kb on - strand at 3414.494 kb on - strand at 3414.541 kb on + strand at 3414.565 kb on + strand at 3414.573 kb on - strand at 3414.574 kb on + strand at 3414.621 kb on + strand at 3414.628 kb on - strand at 3414.802 kb on + strand, within PGA1_c32570 at 3414.802 kb on + strand, within PGA1_c32570 at 3414.802 kb on + strand, within PGA1_c32570 at 3414.805 kb on - strand, within PGA1_c32570 at 3414.810 kb on - strand, within PGA1_c32570 at 3414.810 kb on - strand, within PGA1_c32570 at 3414.810 kb on - strand, within PGA1_c32570 at 3414.835 kb on + strand, within PGA1_c32570 at 3414.869 kb on - strand, within PGA1_c32570 at 3414.947 kb on - strand, within PGA1_c32570 at 3415.005 kb on - strand, within PGA1_c32570 at 3415.053 kb on + strand, within PGA1_c32570 at 3415.060 kb on - strand, within PGA1_c32570 at 3415.110 kb on - strand, within PGA1_c32570 at 3415.146 kb on - strand, within PGA1_c32570 at 3415.191 kb on + strand, within PGA1_c32570 at 3415.291 kb on + strand, within PGA1_c32570 at 3415.291 kb on + strand, within PGA1_c32570 at 3415.291 kb on + strand, within PGA1_c32570 at 3415.377 kb on + strand, within PGA1_c32570 at 3415.385 kb on + strand, within PGA1_c32570 at 3415.385 kb on + strand, within PGA1_c32570
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 3,412,625 - PGA1_c32550 0.22 +0.3 3,412,631 + PGA1_c32550 0.22 -1.6 3,412,639 - PGA1_c32550 0.23 +0.8 3,412,653 - PGA1_c32550 0.24 -1.0 3,412,866 - PGA1_c32550 0.41 -0.5 3,412,871 + PGA1_c32550 0.42 -0.2 3,412,871 + PGA1_c32550 0.42 -1.2 3,412,871 + PGA1_c32550 0.42 -1.2 3,412,879 - PGA1_c32550 0.43 -0.5 3,412,879 - PGA1_c32550 0.43 +1.3 3,412,961 - PGA1_c32550 0.49 +1.4 3,412,961 - PGA1_c32550 0.49 +0.2 3,413,024 + PGA1_c32550 0.54 +0.1 3,413,043 - PGA1_c32550 0.56 -0.7 3,413,052 + PGA1_c32550 0.57 -0.9 3,413,065 - PGA1_c32550 0.58 -0.5 3,413,088 + PGA1_c32550 0.60 +1.0 3,413,096 - PGA1_c32550 0.60 +0.6 3,413,096 - PGA1_c32550 0.60 +0.2 3,413,221 + PGA1_c32550 0.71 +0.0 3,413,370 + PGA1_c32550 0.83 -0.9 3,413,378 - PGA1_c32550 0.83 +0.5 3,413,430 + PGA1_c32550 0.88 -0.2 3,413,492 - -0.2 3,413,562 - -2.1 3,413,586 - -0.6 3,413,642 + +0.2 3,413,711 - PGA1_c32560 0.14 +0.5 3,413,711 - PGA1_c32560 0.14 +0.8 3,413,711 - PGA1_c32560 0.14 +1.7 3,413,757 + PGA1_c32560 0.20 +0.4 3,413,765 - PGA1_c32560 0.21 +0.8 3,413,795 + PGA1_c32560 0.24 +0.5 3,413,799 + PGA1_c32560 0.25 -0.2 3,413,803 - PGA1_c32560 0.25 -0.6 3,413,806 + PGA1_c32560 0.25 +1.1 3,413,806 + PGA1_c32560 0.25 +1.1 3,413,812 - PGA1_c32560 0.26 +0.6 3,413,814 - PGA1_c32560 0.26 +0.1 3,413,848 - PGA1_c32560 0.30 -0.6 3,414,018 - PGA1_c32560 0.51 +2.4 3,414,094 + PGA1_c32560 0.60 +0.8 3,414,102 - PGA1_c32560 0.61 -0.5 3,414,161 - PGA1_c32560 0.68 -0.4 3,414,161 - PGA1_c32560 0.68 +0.1 3,414,321 + PGA1_c32560 0.87 -0.0 3,414,343 + PGA1_c32560 0.90 -0.2 3,414,352 + +0.6 3,414,449 + -0.3 3,414,449 + -0.4 3,414,449 + -0.2 3,414,449 + -0.9 3,414,449 + +0.2 3,414,457 - -1.8 3,414,457 - +0.2 3,414,457 - -1.1 3,414,457 - +0.1 3,414,457 - -0.5 3,414,457 - +0.8 3,414,457 - +0.2 3,414,457 - -1.0 3,414,457 - +0.8 3,414,457 - +0.3 3,414,457 - -0.3 3,414,457 - +0.8 3,414,476 - +0.6 3,414,476 - +0.6 3,414,479 + -0.3 3,414,487 - +0.5 3,414,494 - +0.4 3,414,541 + -0.3 3,414,565 + +0.8 3,414,573 - -0.1 3,414,574 + -0.9 3,414,621 + +0.2 3,414,628 - -0.5 3,414,802 + PGA1_c32570 0.17 -0.5 3,414,802 + PGA1_c32570 0.17 -0.6 3,414,802 + PGA1_c32570 0.17 +0.2 3,414,805 - PGA1_c32570 0.17 -0.7 3,414,810 - PGA1_c32570 0.17 +0.6 3,414,810 - PGA1_c32570 0.17 -1.6 3,414,810 - PGA1_c32570 0.17 -2.2 3,414,835 + PGA1_c32570 0.19 +0.0 3,414,869 - PGA1_c32570 0.22 +1.0 3,414,947 - PGA1_c32570 0.28 -0.2 3,415,005 - PGA1_c32570 0.33 +0.3 3,415,053 + PGA1_c32570 0.36 +1.0 3,415,060 - PGA1_c32570 0.37 -1.0 3,415,110 - PGA1_c32570 0.41 +0.2 3,415,146 - PGA1_c32570 0.44 -0.4 3,415,191 + PGA1_c32570 0.47 +1.8 3,415,291 + PGA1_c32570 0.55 +0.8 3,415,291 + PGA1_c32570 0.55 +0.5 3,415,291 + PGA1_c32570 0.55 -0.6 3,415,377 + PGA1_c32570 0.62 -0.4 3,415,385 + PGA1_c32570 0.62 +0.2 3,415,385 + PGA1_c32570 0.62 +0.8
Or see this region's nucleotide sequence