Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03290 and PGA1_c03300 are separated by 531 nucleotides PGA1_c03300 and PGA1_c03310 are separated by 166 nucleotides PGA1_c03310 and PGA1_c03320 are separated by 157 nucleotides
PGA1_c03290: PGA1_c03290 - transcription elongation factor GreA, at 314,781 to 315,251
_c03290
PGA1_c03300: PGA1_c03300 - glyoxalase/bleomycin resistance protein domain-containing protein, at 315,783 to 316,166
_c03300
PGA1_c03310: PGA1_c03310 - redox-sensitive transcriptional activator, at 316,333 to 316,827
_c03310
PGA1_c03320: PGA1_c03320 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 316,985 to 318,634
_c03320
Position (kb) 315
316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 314.785 kb on + strand at 314.835 kb on + strand, within PGA1_c03290 at 314.858 kb on - strand, within PGA1_c03290 at 314.870 kb on + strand, within PGA1_c03290 at 314.877 kb on + strand, within PGA1_c03290 at 314.885 kb on - strand, within PGA1_c03290 at 314.895 kb on - strand, within PGA1_c03290 at 315.135 kb on - strand, within PGA1_c03290 at 315.157 kb on + strand, within PGA1_c03290 at 315.165 kb on - strand, within PGA1_c03290 at 315.165 kb on - strand, within PGA1_c03290 at 315.216 kb on + strand at 315.232 kb on - strand at 315.329 kb on + strand at 315.359 kb on - strand at 315.372 kb on - strand at 315.374 kb on + strand at 315.473 kb on - strand at 315.513 kb on - strand at 315.519 kb on + strand at 315.533 kb on - strand at 315.542 kb on + strand at 315.542 kb on + strand at 315.550 kb on - strand at 315.550 kb on - strand at 315.553 kb on + strand at 315.561 kb on - strand at 315.569 kb on - strand at 315.649 kb on - strand at 315.655 kb on + strand at 315.655 kb on + strand at 315.711 kb on - strand at 315.740 kb on + strand at 315.760 kb on + strand at 315.858 kb on + strand, within PGA1_c03300 at 315.858 kb on + strand, within PGA1_c03300 at 315.871 kb on + strand, within PGA1_c03300 at 315.875 kb on + strand, within PGA1_c03300 at 315.896 kb on + strand, within PGA1_c03300 at 315.902 kb on - strand, within PGA1_c03300 at 315.926 kb on - strand, within PGA1_c03300 at 315.961 kb on - strand, within PGA1_c03300 at 315.966 kb on - strand, within PGA1_c03300 at 315.969 kb on + strand, within PGA1_c03300 at 315.969 kb on - strand, within PGA1_c03300 at 315.969 kb on - strand, within PGA1_c03300 at 315.989 kb on + strand, within PGA1_c03300 at 315.989 kb on - strand, within PGA1_c03300 at 315.997 kb on - strand, within PGA1_c03300 at 316.033 kb on + strand, within PGA1_c03300 at 316.034 kb on + strand, within PGA1_c03300 at 316.034 kb on + strand, within PGA1_c03300 at 316.042 kb on - strand, within PGA1_c03300 at 316.123 kb on + strand, within PGA1_c03300 at 316.123 kb on + strand, within PGA1_c03300 at 316.156 kb on - strand at 316.167 kb on + strand at 316.169 kb on - strand at 316.284 kb on + strand at 316.299 kb on + strand at 316.307 kb on - strand at 316.307 kb on - strand at 316.314 kb on - strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.316 kb on + strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.324 kb on - strand at 316.350 kb on - strand at 316.364 kb on + strand at 316.372 kb on - strand at 316.419 kb on + strand, within PGA1_c03310 at 316.419 kb on + strand, within PGA1_c03310 at 316.419 kb on + strand, within PGA1_c03310 at 316.419 kb on + strand, within PGA1_c03310 at 316.421 kb on + strand, within PGA1_c03310 at 316.425 kb on + strand, within PGA1_c03310 at 316.433 kb on - strand, within PGA1_c03310 at 316.439 kb on - strand, within PGA1_c03310 at 316.440 kb on + strand, within PGA1_c03310 at 316.474 kb on + strand, within PGA1_c03310 at 316.474 kb on + strand, within PGA1_c03310 at 316.519 kb on - strand, within PGA1_c03310 at 316.561 kb on + strand, within PGA1_c03310 at 316.569 kb on - strand, within PGA1_c03310 at 316.569 kb on - strand, within PGA1_c03310 at 316.569 kb on - strand, within PGA1_c03310 at 316.597 kb on - strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.703 kb on + strand, within PGA1_c03310 at 316.732 kb on + strand, within PGA1_c03310 at 316.736 kb on - strand, within PGA1_c03310 at 316.738 kb on + strand, within PGA1_c03310 at 316.744 kb on + strand, within PGA1_c03310 at 316.760 kb on + strand, within PGA1_c03310 at 316.852 kb on + strand at 316.857 kb on - strand at 316.860 kb on - strand at 316.862 kb on + strand at 316.862 kb on + strand at 316.862 kb on + strand at 316.862 kb on + strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.870 kb on - strand at 316.878 kb on + strand at 316.909 kb on - strand at 316.942 kb on - strand at 316.942 kb on - strand at 316.957 kb on + strand at 316.957 kb on + strand at 316.960 kb on - strand at 316.960 kb on - strand at 316.960 kb on - strand at 316.964 kb on - strand at 316.965 kb on - strand at 316.965 kb on - strand at 316.965 kb on - strand at 316.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 314,785 + -0.6 314,835 + PGA1_c03290 0.11 -2.6 314,858 - PGA1_c03290 0.16 -2.8 314,870 + PGA1_c03290 0.19 -1.6 314,877 + PGA1_c03290 0.20 -0.6 314,885 - PGA1_c03290 0.22 -0.6 314,895 - PGA1_c03290 0.24 -3.3 315,135 - PGA1_c03290 0.75 -2.2 315,157 + PGA1_c03290 0.80 -2.8 315,165 - PGA1_c03290 0.82 -1.0 315,165 - PGA1_c03290 0.82 +1.4 315,216 + +0.1 315,232 - -2.4 315,329 + +0.2 315,359 - -0.6 315,372 - +1.2 315,374 + +1.4 315,473 - -0.3 315,513 - +0.0 315,519 + +0.4 315,533 - -0.2 315,542 + -0.8 315,542 + +0.3 315,550 - +2.5 315,550 - +1.0 315,553 + -0.4 315,561 - -0.4 315,569 - -0.3 315,649 - -2.4 315,655 + -0.5 315,655 + +1.1 315,711 - -0.2 315,740 + -0.4 315,760 + -0.6 315,858 + PGA1_c03300 0.20 -0.6 315,858 + PGA1_c03300 0.20 -1.3 315,871 + PGA1_c03300 0.23 +0.0 315,875 + PGA1_c03300 0.24 +0.4 315,896 + PGA1_c03300 0.29 +0.5 315,902 - PGA1_c03300 0.31 +0.1 315,926 - PGA1_c03300 0.37 +0.1 315,961 - PGA1_c03300 0.46 -0.6 315,966 - PGA1_c03300 0.48 -0.5 315,969 + PGA1_c03300 0.48 -0.2 315,969 - PGA1_c03300 0.48 +1.4 315,969 - PGA1_c03300 0.48 +0.8 315,989 + PGA1_c03300 0.54 +0.4 315,989 - PGA1_c03300 0.54 -0.6 315,997 - PGA1_c03300 0.56 +0.2 316,033 + PGA1_c03300 0.65 +0.4 316,034 + PGA1_c03300 0.65 +0.3 316,034 + PGA1_c03300 0.65 +1.0 316,042 - PGA1_c03300 0.67 +0.2 316,123 + PGA1_c03300 0.89 +0.6 316,123 + PGA1_c03300 0.89 -1.2 316,156 - +0.8 316,167 + +2.0 316,169 - -1.2 316,284 + -1.4 316,299 + +0.2 316,307 - -0.0 316,307 - +0.5 316,314 - +0.2 316,316 + +1.1 316,316 + +1.8 316,316 + -0.4 316,316 + +2.2 316,316 + -1.8 316,316 + +2.6 316,316 + +1.0 316,316 + -0.0 316,316 + -0.2 316,324 - +1.0 316,324 - +1.0 316,324 - -0.3 316,324 - -0.8 316,324 - +0.8 316,324 - +0.8 316,324 - +0.6 316,324 - -0.2 316,324 - -1.1 316,324 - +2.1 316,324 - +0.4 316,350 - +0.9 316,364 + +0.1 316,372 - -0.8 316,419 + PGA1_c03310 0.17 +1.0 316,419 + PGA1_c03310 0.17 -0.8 316,419 + PGA1_c03310 0.17 -0.1 316,419 + PGA1_c03310 0.17 -2.1 316,421 + PGA1_c03310 0.18 +1.0 316,425 + PGA1_c03310 0.19 +0.2 316,433 - PGA1_c03310 0.20 -0.6 316,439 - PGA1_c03310 0.21 +0.4 316,440 + PGA1_c03310 0.22 -0.1 316,474 + PGA1_c03310 0.28 +1.0 316,474 + PGA1_c03310 0.28 -0.7 316,519 - PGA1_c03310 0.38 -0.2 316,561 + PGA1_c03310 0.46 +0.4 316,569 - PGA1_c03310 0.48 -0.2 316,569 - PGA1_c03310 0.48 -0.2 316,569 - PGA1_c03310 0.48 +0.1 316,597 - PGA1_c03310 0.53 +0.5 316,703 + PGA1_c03310 0.75 -1.2 316,703 + PGA1_c03310 0.75 -0.6 316,703 + PGA1_c03310 0.75 -2.0 316,703 + PGA1_c03310 0.75 +0.0 316,732 + PGA1_c03310 0.81 -0.2 316,736 - PGA1_c03310 0.81 +0.4 316,738 + PGA1_c03310 0.82 +0.8 316,744 + PGA1_c03310 0.83 -0.8 316,760 + PGA1_c03310 0.86 +0.4 316,852 + +0.8 316,857 - -0.1 316,860 - +0.7 316,862 + +0.4 316,862 + -0.3 316,862 + +0.5 316,862 + +0.1 316,870 - +1.1 316,870 - -0.3 316,870 - -0.2 316,870 - -0.5 316,870 - +0.6 316,870 - -0.3 316,878 + -0.3 316,909 - -0.5 316,942 - -0.8 316,942 - +1.8 316,957 + +1.8 316,957 + +0.5 316,960 - -0.3 316,960 - +0.1 316,960 - +0.4 316,964 - +0.6 316,965 - +0.0 316,965 - +0.8 316,965 - -0.8 316,965 - -0.2
Or see this region's nucleotide sequence