Strain Fitness in Marinobacter adhaerens HP15 around HP15_2854

Experiment: m.b. perchlorate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2853 and HP15_2854 are separated by 48 nucleotidesHP15_2854 and HP15_2855 are separated by 440 nucleotides HP15_2853: HP15_2853 - sucrose phosphorylase, at 2,993,679 to 2,995,121 _2853 HP15_2854: HP15_2854 - conserved hypothetical protein, secreted, at 2,995,170 to 2,995,610 _2854 HP15_2855: HP15_2855 - short-chain dehydrogenase/reductase SDR, at 2,996,051 to 2,996,821 _2855 Position (kb) 2995 2996Strain fitness (log2 ratio) -2 -1 0 1 2at 2994.182 kb on - strand, within HP15_2853at 2994.199 kb on - strand, within HP15_2853at 2994.258 kb on - strand, within HP15_2853at 2994.298 kb on + strand, within HP15_2853at 2994.430 kb on + strand, within HP15_2853at 2994.438 kb on - strand, within HP15_2853at 2994.633 kb on - strand, within HP15_2853at 2994.684 kb on - strand, within HP15_2853at 2994.780 kb on - strand, within HP15_2853at 2994.780 kb on - strand, within HP15_2853at 2994.787 kb on - strand, within HP15_2853at 2994.814 kb on + strand, within HP15_2853at 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.149 kb on - strandat 2995.167 kb on + strandat 2995.167 kb on - strandat 2995.184 kb on + strandat 2995.202 kb on + strandat 2995.310 kb on + strand, within HP15_2854at 2995.371 kb on - strand, within HP15_2854at 2995.431 kb on - strand, within HP15_2854at 2995.432 kb on + strand, within HP15_2854at 2995.432 kb on + strand, within HP15_2854at 2995.432 kb on + strand, within HP15_2854at 2995.435 kb on - strand, within HP15_2854at 2995.508 kb on + strand, within HP15_2854at 2995.531 kb on - strand, within HP15_2854at 2995.668 kb on - strandat 2995.763 kb on + strandat 2995.810 kb on - strandat 2995.833 kb on - strandat 2995.860 kb on + strandat 2995.868 kb on - strandat 2995.924 kb on + strandat 2995.932 kb on - strandat 2996.028 kb on + strandat 2996.169 kb on + strand, within HP15_2855at 2996.177 kb on + strand, within HP15_2855at 2996.235 kb on + strand, within HP15_2855at 2996.245 kb on + strand, within HP15_2855at 2996.255 kb on - strand, within HP15_2855at 2996.296 kb on + strand, within HP15_2855at 2996.343 kb on - strand, within HP15_2855at 2996.366 kb on - strand, within HP15_2855at 2996.391 kb on + strand, within HP15_2855at 2996.402 kb on + strand, within HP15_2855at 2996.434 kb on - strand, within HP15_2855at 2996.510 kb on - strand, within HP15_2855at 2996.525 kb on - strand, within HP15_2855at 2996.530 kb on + strand, within HP15_2855at 2996.530 kb on + strand, within HP15_2855at 2996.566 kb on + strand, within HP15_2855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
remove
2,994,182 - HP15_2853 0.35 -0.7
2,994,199 - HP15_2853 0.36 +0.4
2,994,258 - HP15_2853 0.40 -0.5
2,994,298 + HP15_2853 0.43 -0.3
2,994,430 + HP15_2853 0.52 +0.1
2,994,438 - HP15_2853 0.53 -0.7
2,994,633 - HP15_2853 0.66 +0.4
2,994,684 - HP15_2853 0.70 -1.6
2,994,780 - HP15_2853 0.76 -0.1
2,994,780 - HP15_2853 0.76 -0.0
2,994,787 - HP15_2853 0.77 -0.3
2,994,814 + HP15_2853 0.79 -0.1
2,995,149 - -0.7
2,995,149 - -0.9
2,995,149 - +0.1
2,995,149 - -0.4
2,995,167 + -0.2
2,995,167 - +0.1
2,995,184 + +2.2
2,995,202 + +0.5
2,995,310 + HP15_2854 0.32 -0.5
2,995,371 - HP15_2854 0.46 -0.0
2,995,431 - HP15_2854 0.59 +0.7
2,995,432 + HP15_2854 0.59 +1.3
2,995,432 + HP15_2854 0.59 -0.4
2,995,432 + HP15_2854 0.59 +0.4
2,995,435 - HP15_2854 0.60 +0.9
2,995,508 + HP15_2854 0.77 -0.3
2,995,531 - HP15_2854 0.82 -0.2
2,995,668 - +0.9
2,995,763 + -0.6
2,995,810 - +1.4
2,995,833 - -1.9
2,995,860 + +0.1
2,995,868 - -0.4
2,995,924 + +0.1
2,995,932 - -1.2
2,996,028 + +0.4
2,996,169 + HP15_2855 0.15 +1.4
2,996,177 + HP15_2855 0.16 +0.3
2,996,235 + HP15_2855 0.24 -0.2
2,996,245 + HP15_2855 0.25 -0.4
2,996,255 - HP15_2855 0.26 +0.3
2,996,296 + HP15_2855 0.32 -0.7
2,996,343 - HP15_2855 0.38 -0.2
2,996,366 - HP15_2855 0.41 +0.2
2,996,391 + HP15_2855 0.44 +0.1
2,996,402 + HP15_2855 0.46 +0.8
2,996,434 - HP15_2855 0.50 -0.1
2,996,510 - HP15_2855 0.60 +0.4
2,996,525 - HP15_2855 0.61 +0.1
2,996,530 + HP15_2855 0.62 -1.2
2,996,530 + HP15_2855 0.62 +2.0
2,996,566 + HP15_2855 0.67 +0.2

Or see this region's nucleotide sequence