Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c29240 and PGA1_c29250 are separated by 186 nucleotides PGA1_c29250 and PGA1_c29260 are separated by 24 nucleotides PGA1_c29260 and PGA1_c29270 overlap by 4 nucleotides
PGA1_c29240: PGA1_c29240 - hypothetical protein, at 3,060,122 to 3,060,448
_c29240
PGA1_c29250: PGA1_c29250 - putative haloacid dehalogenase-like hydrolase, at 3,060,635 to 3,061,303
_c29250
PGA1_c29260: PGA1_c29260 - ribosomal RNA small subunit methyltransferase D, at 3,061,328 to 3,061,882
_c29260
PGA1_c29270: PGA1_c29270 - rhodocoxin reductase ThcD, at 3,061,879 to 3,063,090
_c29270
Position (kb)
3061
3062 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3060.359 kb on - strand, within PGA1_c29240 at 3060.400 kb on + strand, within PGA1_c29240 at 3060.413 kb on + strand, within PGA1_c29240 at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.419 kb on + strand at 3060.421 kb on - strand at 3060.427 kb on - strand at 3060.427 kb on - strand at 3060.427 kb on - strand at 3060.427 kb on - strand at 3060.483 kb on - strand at 3060.483 kb on - strand at 3060.496 kb on + strand at 3060.528 kb on - strand at 3060.543 kb on - strand at 3060.543 kb on - strand at 3060.567 kb on + strand at 3060.567 kb on + strand at 3060.567 kb on + strand at 3060.567 kb on + strand at 3060.572 kb on - strand at 3060.575 kb on - strand at 3060.575 kb on - strand at 3060.575 kb on - strand at 3060.575 kb on - strand at 3060.575 kb on - strand at 3060.575 kb on - strand at 3060.589 kb on + strand at 3060.621 kb on + strand at 3060.621 kb on + strand at 3060.629 kb on - strand at 3060.644 kb on - strand at 3060.648 kb on + strand at 3060.654 kb on - strand at 3060.663 kb on + strand at 3060.751 kb on - strand, within PGA1_c29250 at 3060.751 kb on - strand, within PGA1_c29250 at 3060.751 kb on - strand, within PGA1_c29250 at 3060.751 kb on - strand, within PGA1_c29250 at 3060.751 kb on - strand, within PGA1_c29250 at 3060.804 kb on + strand, within PGA1_c29250 at 3060.850 kb on - strand, within PGA1_c29250 at 3060.874 kb on - strand, within PGA1_c29250 at 3060.908 kb on - strand, within PGA1_c29250 at 3060.928 kb on + strand, within PGA1_c29250 at 3060.928 kb on + strand, within PGA1_c29250 at 3060.928 kb on + strand, within PGA1_c29250 at 3060.936 kb on - strand, within PGA1_c29250 at 3061.055 kb on + strand, within PGA1_c29250 at 3061.063 kb on - strand, within PGA1_c29250 at 3061.068 kb on + strand, within PGA1_c29250 at 3061.073 kb on + strand, within PGA1_c29250 at 3061.076 kb on - strand, within PGA1_c29250 at 3061.169 kb on + strand, within PGA1_c29250 at 3061.169 kb on - strand, within PGA1_c29250 at 3061.183 kb on + strand, within PGA1_c29250 at 3061.191 kb on - strand, within PGA1_c29250 at 3061.308 kb on - strand at 3061.308 kb on - strand at 3061.347 kb on + strand at 3061.348 kb on - strand at 3061.350 kb on - strand at 3061.350 kb on - strand at 3061.357 kb on - strand at 3061.732 kb on + strand, within PGA1_c29260 at 3061.732 kb on + strand, within PGA1_c29260 at 3061.740 kb on - strand, within PGA1_c29260 at 3061.740 kb on - strand, within PGA1_c29260 at 3061.740 kb on - strand, within PGA1_c29260 at 3061.786 kb on - strand, within PGA1_c29260 at 3061.805 kb on - strand, within PGA1_c29260 at 3061.827 kb on + strand at 3061.834 kb on - strand at 3061.835 kb on - strand at 3061.875 kb on + strand at 3061.875 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 3,060,359 - PGA1_c29240 0.72 +0.0 3,060,400 + PGA1_c29240 0.85 -0.3 3,060,413 + PGA1_c29240 0.89 -0.3 3,060,419 + -0.5 3,060,419 + +0.6 3,060,419 + -0.3 3,060,419 + -0.9 3,060,419 + -0.2 3,060,419 + -0.3 3,060,419 + +0.2 3,060,419 + +0.4 3,060,419 + +0.1 3,060,419 + -0.7 3,060,419 + -1.3 3,060,419 + +0.1 3,060,419 + -0.4 3,060,419 + +1.9 3,060,419 + -0.8 3,060,419 + +0.9 3,060,419 + -0.9 3,060,419 + +0.7 3,060,419 + +0.7 3,060,419 + +0.0 3,060,419 + -0.3 3,060,419 + +0.9 3,060,419 + -0.9 3,060,421 - -0.3 3,060,427 - -1.4 3,060,427 - +0.4 3,060,427 - -0.1 3,060,427 - +0.7 3,060,483 - +0.4 3,060,483 - +0.4 3,060,496 + -0.1 3,060,528 - -0.7 3,060,543 - -1.1 3,060,543 - -1.7 3,060,567 + +1.1 3,060,567 + +0.0 3,060,567 + +0.2 3,060,567 + +0.6 3,060,572 - -0.1 3,060,575 - +0.1 3,060,575 - -0.4 3,060,575 - +1.0 3,060,575 - +1.0 3,060,575 - +0.7 3,060,575 - -1.1 3,060,589 + +0.5 3,060,621 + -0.1 3,060,621 + +0.5 3,060,629 - -0.8 3,060,644 - +0.1 3,060,648 + +0.3 3,060,654 - -0.7 3,060,663 + +0.5 3,060,751 - PGA1_c29250 0.17 +0.5 3,060,751 - PGA1_c29250 0.17 +0.1 3,060,751 - PGA1_c29250 0.17 +1.0 3,060,751 - PGA1_c29250 0.17 -1.0 3,060,751 - PGA1_c29250 0.17 +0.5 3,060,804 + PGA1_c29250 0.25 +1.2 3,060,850 - PGA1_c29250 0.32 +0.6 3,060,874 - PGA1_c29250 0.36 +0.2 3,060,908 - PGA1_c29250 0.41 -0.5 3,060,928 + PGA1_c29250 0.44 +0.7 3,060,928 + PGA1_c29250 0.44 -1.9 3,060,928 + PGA1_c29250 0.44 -1.3 3,060,936 - PGA1_c29250 0.45 -0.0 3,061,055 + PGA1_c29250 0.63 +0.3 3,061,063 - PGA1_c29250 0.64 -0.7 3,061,068 + PGA1_c29250 0.65 +1.1 3,061,073 + PGA1_c29250 0.65 +0.1 3,061,076 - PGA1_c29250 0.66 -0.1 3,061,169 + PGA1_c29250 0.80 -0.4 3,061,169 - PGA1_c29250 0.80 +1.2 3,061,183 + PGA1_c29250 0.82 -0.5 3,061,191 - PGA1_c29250 0.83 +0.1 3,061,308 - +0.7 3,061,308 - +0.3 3,061,347 + +0.2 3,061,348 - -0.6 3,061,350 - -0.1 3,061,350 - +0.1 3,061,357 - +1.3 3,061,732 + PGA1_c29260 0.73 +0.7 3,061,732 + PGA1_c29260 0.73 -0.6 3,061,740 - PGA1_c29260 0.74 -0.4 3,061,740 - PGA1_c29260 0.74 -1.1 3,061,740 - PGA1_c29260 0.74 -0.4 3,061,786 - PGA1_c29260 0.83 -0.8 3,061,805 - PGA1_c29260 0.86 -0.0 3,061,827 + -0.0 3,061,834 - -0.3 3,061,835 - -0.5 3,061,875 + -1.2 3,061,875 + -0.3
Or see this region's nucleotide sequence