Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2623 and HP15_2624 are separated by 90 nucleotides HP15_2624 and HP15_2625 are separated by 7 nucleotides HP15_2625 and HP15_2626 are separated by 15 nucleotides
HP15_2623: HP15_2623 - leucine dehydrogenase, at 2,774,069 to 2,775,184
_2623
HP15_2624: HP15_2624 - sodium-dependent transporter family protein, at 2,775,275 to 2,776,687
_2624
HP15_2625: HP15_2625 - silent information regulator protein Sir2, at 2,776,695 to 2,777,597
_2625
HP15_2626: HP15_2626 - conserved hypothetical protein, at 2,777,613 to 2,778,344
_2626
Position (kb)
2775
2776
2777 Strain fitness (log2 ratio)
-1
0
1 at 2774.301 kb on + strand, within HP15_2623 at 2774.376 kb on - strand, within HP15_2623 at 2774.567 kb on - strand, within HP15_2623 at 2774.615 kb on + strand, within HP15_2623 at 2774.671 kb on + strand, within HP15_2623 at 2774.671 kb on + strand, within HP15_2623 at 2774.672 kb on - strand, within HP15_2623 at 2774.677 kb on - strand, within HP15_2623 at 2774.677 kb on - strand, within HP15_2623 at 2774.743 kb on + strand, within HP15_2623 at 2774.773 kb on - strand, within HP15_2623 at 2774.793 kb on - strand, within HP15_2623 at 2774.817 kb on + strand, within HP15_2623 at 2774.822 kb on + strand, within HP15_2623 at 2774.830 kb on - strand, within HP15_2623 at 2774.896 kb on + strand, within HP15_2623 at 2774.904 kb on - strand, within HP15_2623 at 2774.947 kb on - strand, within HP15_2623 at 2774.983 kb on - strand, within HP15_2623 at 2775.033 kb on - strand, within HP15_2623 at 2775.047 kb on - strand, within HP15_2623 at 2775.047 kb on - strand, within HP15_2623 at 2775.047 kb on - strand, within HP15_2623 at 2775.083 kb on - strand at 2775.152 kb on - strand at 2775.384 kb on + strand at 2775.386 kb on - strand at 2775.408 kb on - strand at 2775.541 kb on - strand, within HP15_2624 at 2775.666 kb on + strand, within HP15_2624 at 2775.693 kb on + strand, within HP15_2624 at 2775.785 kb on + strand, within HP15_2624 at 2775.872 kb on - strand, within HP15_2624 at 2775.930 kb on - strand, within HP15_2624 at 2775.995 kb on - strand, within HP15_2624 at 2776.021 kb on - strand, within HP15_2624 at 2776.103 kb on - strand, within HP15_2624 at 2776.126 kb on + strand, within HP15_2624 at 2776.167 kb on + strand, within HP15_2624 at 2776.175 kb on - strand, within HP15_2624 at 2776.268 kb on + strand, within HP15_2624 at 2776.326 kb on + strand, within HP15_2624 at 2776.326 kb on + strand, within HP15_2624 at 2776.326 kb on + strand, within HP15_2624 at 2776.326 kb on + strand, within HP15_2624 at 2776.351 kb on - strand, within HP15_2624 at 2776.351 kb on - strand, within HP15_2624 at 2776.391 kb on + strand, within HP15_2624 at 2776.391 kb on + strand, within HP15_2624 at 2776.519 kb on + strand, within HP15_2624 at 2776.591 kb on + strand at 2776.637 kb on - strand at 2776.664 kb on + strand at 2776.701 kb on - strand at 2776.907 kb on - strand, within HP15_2625 at 2777.073 kb on + strand, within HP15_2625 at 2777.073 kb on + strand, within HP15_2625 at 2777.073 kb on + strand, within HP15_2625 at 2777.081 kb on - strand, within HP15_2625 at 2777.139 kb on - strand, within HP15_2625 at 2777.171 kb on + strand, within HP15_2625 at 2777.227 kb on - strand, within HP15_2625 at 2777.241 kb on - strand, within HP15_2625 at 2777.273 kb on + strand, within HP15_2625 at 2777.297 kb on - strand, within HP15_2625 at 2777.359 kb on + strand, within HP15_2625 at 2777.431 kb on + strand, within HP15_2625 at 2777.438 kb on + strand, within HP15_2625 at 2777.439 kb on - strand, within HP15_2625 at 2777.446 kb on - strand, within HP15_2625
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 2,774,301 + HP15_2623 0.21 -0.1 2,774,376 - HP15_2623 0.28 +0.0 2,774,567 - HP15_2623 0.45 +0.3 2,774,615 + HP15_2623 0.49 +0.3 2,774,671 + HP15_2623 0.54 -0.2 2,774,671 + HP15_2623 0.54 -1.3 2,774,672 - HP15_2623 0.54 +0.9 2,774,677 - HP15_2623 0.54 +0.1 2,774,677 - HP15_2623 0.54 +0.1 2,774,743 + HP15_2623 0.60 -0.3 2,774,773 - HP15_2623 0.63 -1.5 2,774,793 - HP15_2623 0.65 -0.9 2,774,817 + HP15_2623 0.67 -0.1 2,774,822 + HP15_2623 0.67 -0.6 2,774,830 - HP15_2623 0.68 +1.3 2,774,896 + HP15_2623 0.74 -0.4 2,774,904 - HP15_2623 0.75 +0.4 2,774,947 - HP15_2623 0.79 -0.3 2,774,983 - HP15_2623 0.82 +0.1 2,775,033 - HP15_2623 0.86 -0.4 2,775,047 - HP15_2623 0.88 +0.4 2,775,047 - HP15_2623 0.88 +1.2 2,775,047 - HP15_2623 0.88 -1.3 2,775,083 - -1.6 2,775,152 - +0.6 2,775,384 + -0.4 2,775,386 - +1.6 2,775,408 - +0.3 2,775,541 - HP15_2624 0.19 +0.3 2,775,666 + HP15_2624 0.28 +0.3 2,775,693 + HP15_2624 0.30 +0.9 2,775,785 + HP15_2624 0.36 +1.3 2,775,872 - HP15_2624 0.42 +0.6 2,775,930 - HP15_2624 0.46 +0.2 2,775,995 - HP15_2624 0.51 +0.8 2,776,021 - HP15_2624 0.53 -1.0 2,776,103 - HP15_2624 0.59 +0.5 2,776,126 + HP15_2624 0.60 -0.9 2,776,167 + HP15_2624 0.63 +0.5 2,776,175 - HP15_2624 0.64 +0.7 2,776,268 + HP15_2624 0.70 -0.0 2,776,326 + HP15_2624 0.74 +0.4 2,776,326 + HP15_2624 0.74 -0.8 2,776,326 + HP15_2624 0.74 +0.4 2,776,326 + HP15_2624 0.74 -0.1 2,776,351 - HP15_2624 0.76 -0.2 2,776,351 - HP15_2624 0.76 +0.7 2,776,391 + HP15_2624 0.79 +0.2 2,776,391 + HP15_2624 0.79 -0.2 2,776,519 + HP15_2624 0.88 -1.2 2,776,591 + +0.6 2,776,637 - -0.6 2,776,664 + +0.5 2,776,701 - +0.1 2,776,907 - HP15_2625 0.23 -0.6 2,777,073 + HP15_2625 0.42 -0.3 2,777,073 + HP15_2625 0.42 +0.0 2,777,073 + HP15_2625 0.42 -0.0 2,777,081 - HP15_2625 0.43 +1.6 2,777,139 - HP15_2625 0.49 +0.6 2,777,171 + HP15_2625 0.53 -0.3 2,777,227 - HP15_2625 0.59 +0.6 2,777,241 - HP15_2625 0.60 -0.7 2,777,273 + HP15_2625 0.64 -1.0 2,777,297 - HP15_2625 0.67 +1.3 2,777,359 + HP15_2625 0.74 +0.0 2,777,431 + HP15_2625 0.82 +0.5 2,777,438 + HP15_2625 0.82 -0.3 2,777,439 - HP15_2625 0.82 -0.7 2,777,446 - HP15_2625 0.83 +0.1
Or see this region's nucleotide sequence