Strain Fitness in Marinobacter adhaerens HP15 around HP15_2624

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2623 and HP15_2624 are separated by 90 nucleotidesHP15_2624 and HP15_2625 are separated by 7 nucleotidesHP15_2625 and HP15_2626 are separated by 15 nucleotides HP15_2623: HP15_2623 - leucine dehydrogenase, at 2,774,069 to 2,775,184 _2623 HP15_2624: HP15_2624 - sodium-dependent transporter family protein, at 2,775,275 to 2,776,687 _2624 HP15_2625: HP15_2625 - silent information regulator protein Sir2, at 2,776,695 to 2,777,597 _2625 HP15_2626: HP15_2626 - conserved hypothetical protein, at 2,777,613 to 2,778,344 _2626 Position (kb) 2775 2776 2777Strain fitness (log2 ratio) -1 0 1at 2774.301 kb on + strand, within HP15_2623at 2774.376 kb on - strand, within HP15_2623at 2774.567 kb on - strand, within HP15_2623at 2774.615 kb on + strand, within HP15_2623at 2774.671 kb on + strand, within HP15_2623at 2774.671 kb on + strand, within HP15_2623at 2774.672 kb on - strand, within HP15_2623at 2774.677 kb on - strand, within HP15_2623at 2774.677 kb on - strand, within HP15_2623at 2774.743 kb on + strand, within HP15_2623at 2774.773 kb on - strand, within HP15_2623at 2774.793 kb on - strand, within HP15_2623at 2774.817 kb on + strand, within HP15_2623at 2774.822 kb on + strand, within HP15_2623at 2774.830 kb on - strand, within HP15_2623at 2774.896 kb on + strand, within HP15_2623at 2774.904 kb on - strand, within HP15_2623at 2774.947 kb on - strand, within HP15_2623at 2774.983 kb on - strand, within HP15_2623at 2775.033 kb on - strand, within HP15_2623at 2775.047 kb on - strand, within HP15_2623at 2775.047 kb on - strand, within HP15_2623at 2775.047 kb on - strand, within HP15_2623at 2775.083 kb on - strandat 2775.152 kb on - strandat 2775.384 kb on + strandat 2775.386 kb on - strandat 2775.408 kb on - strandat 2775.541 kb on - strand, within HP15_2624at 2775.666 kb on + strand, within HP15_2624at 2775.693 kb on + strand, within HP15_2624at 2775.785 kb on + strand, within HP15_2624at 2775.872 kb on - strand, within HP15_2624at 2775.930 kb on - strand, within HP15_2624at 2775.995 kb on - strand, within HP15_2624at 2776.021 kb on - strand, within HP15_2624at 2776.103 kb on - strand, within HP15_2624at 2776.126 kb on + strand, within HP15_2624at 2776.167 kb on + strand, within HP15_2624at 2776.175 kb on - strand, within HP15_2624at 2776.268 kb on + strand, within HP15_2624at 2776.326 kb on + strand, within HP15_2624at 2776.326 kb on + strand, within HP15_2624at 2776.326 kb on + strand, within HP15_2624at 2776.326 kb on + strand, within HP15_2624at 2776.351 kb on - strand, within HP15_2624at 2776.351 kb on - strand, within HP15_2624at 2776.391 kb on + strand, within HP15_2624at 2776.391 kb on + strand, within HP15_2624at 2776.519 kb on + strand, within HP15_2624at 2776.591 kb on + strandat 2776.637 kb on - strandat 2776.664 kb on + strandat 2776.701 kb on - strandat 2776.907 kb on - strand, within HP15_2625at 2777.073 kb on + strand, within HP15_2625at 2777.073 kb on + strand, within HP15_2625at 2777.073 kb on + strand, within HP15_2625at 2777.081 kb on - strand, within HP15_2625at 2777.139 kb on - strand, within HP15_2625at 2777.171 kb on + strand, within HP15_2625at 2777.227 kb on - strand, within HP15_2625at 2777.241 kb on - strand, within HP15_2625at 2777.273 kb on + strand, within HP15_2625at 2777.297 kb on - strand, within HP15_2625at 2777.359 kb on + strand, within HP15_2625at 2777.431 kb on + strand, within HP15_2625at 2777.438 kb on + strand, within HP15_2625at 2777.439 kb on - strand, within HP15_2625at 2777.446 kb on - strand, within HP15_2625

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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2,774,301 + HP15_2623 0.21 -0.1
2,774,376 - HP15_2623 0.28 +0.0
2,774,567 - HP15_2623 0.45 +0.3
2,774,615 + HP15_2623 0.49 +0.3
2,774,671 + HP15_2623 0.54 -0.2
2,774,671 + HP15_2623 0.54 -1.3
2,774,672 - HP15_2623 0.54 +0.9
2,774,677 - HP15_2623 0.54 +0.1
2,774,677 - HP15_2623 0.54 +0.1
2,774,743 + HP15_2623 0.60 -0.3
2,774,773 - HP15_2623 0.63 -1.5
2,774,793 - HP15_2623 0.65 -0.9
2,774,817 + HP15_2623 0.67 -0.1
2,774,822 + HP15_2623 0.67 -0.6
2,774,830 - HP15_2623 0.68 +1.3
2,774,896 + HP15_2623 0.74 -0.4
2,774,904 - HP15_2623 0.75 +0.4
2,774,947 - HP15_2623 0.79 -0.3
2,774,983 - HP15_2623 0.82 +0.1
2,775,033 - HP15_2623 0.86 -0.4
2,775,047 - HP15_2623 0.88 +0.4
2,775,047 - HP15_2623 0.88 +1.2
2,775,047 - HP15_2623 0.88 -1.3
2,775,083 - -1.6
2,775,152 - +0.6
2,775,384 + -0.4
2,775,386 - +1.6
2,775,408 - +0.3
2,775,541 - HP15_2624 0.19 +0.3
2,775,666 + HP15_2624 0.28 +0.3
2,775,693 + HP15_2624 0.30 +0.9
2,775,785 + HP15_2624 0.36 +1.3
2,775,872 - HP15_2624 0.42 +0.6
2,775,930 - HP15_2624 0.46 +0.2
2,775,995 - HP15_2624 0.51 +0.8
2,776,021 - HP15_2624 0.53 -1.0
2,776,103 - HP15_2624 0.59 +0.5
2,776,126 + HP15_2624 0.60 -0.9
2,776,167 + HP15_2624 0.63 +0.5
2,776,175 - HP15_2624 0.64 +0.7
2,776,268 + HP15_2624 0.70 -0.0
2,776,326 + HP15_2624 0.74 +0.4
2,776,326 + HP15_2624 0.74 -0.8
2,776,326 + HP15_2624 0.74 +0.4
2,776,326 + HP15_2624 0.74 -0.1
2,776,351 - HP15_2624 0.76 -0.2
2,776,351 - HP15_2624 0.76 +0.7
2,776,391 + HP15_2624 0.79 +0.2
2,776,391 + HP15_2624 0.79 -0.2
2,776,519 + HP15_2624 0.88 -1.2
2,776,591 + +0.6
2,776,637 - -0.6
2,776,664 + +0.5
2,776,701 - +0.1
2,776,907 - HP15_2625 0.23 -0.6
2,777,073 + HP15_2625 0.42 -0.3
2,777,073 + HP15_2625 0.42 +0.0
2,777,073 + HP15_2625 0.42 -0.0
2,777,081 - HP15_2625 0.43 +1.6
2,777,139 - HP15_2625 0.49 +0.6
2,777,171 + HP15_2625 0.53 -0.3
2,777,227 - HP15_2625 0.59 +0.6
2,777,241 - HP15_2625 0.60 -0.7
2,777,273 + HP15_2625 0.64 -1.0
2,777,297 - HP15_2625 0.67 +1.3
2,777,359 + HP15_2625 0.74 +0.0
2,777,431 + HP15_2625 0.82 +0.5
2,777,438 + HP15_2625 0.82 -0.3
2,777,439 - HP15_2625 0.82 -0.7
2,777,446 - HP15_2625 0.83 +0.1

Or see this region's nucleotide sequence