Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16890 and PGA1_c16900 overlap by 4 nucleotides PGA1_c16900 and PGA1_c16910 are separated by 14 nucleotides PGA1_c16910 and PGA1_c16920 overlap by 1 nucleotides
PGA1_c16890: PGA1_c16890 - anthranilate phosphoribosyltransferase TrpD, at 1,763,636 to 1,764,664
_c16890
PGA1_c16900: PGA1_c16900 - uracil-DNA glycosylase Ung, at 1,764,661 to 1,765,314
_c16900
PGA1_c16910: PGA1_c16910 - indole-3-glycerol phosphate synthase TrpC, at 1,765,329 to 1,766,141
_c16910
PGA1_c16920: PGA1_c16920 - molybdenum cofactor biosynthesis protein C, at 1,766,141 to 1,766,611
_c16920
Position (kb)
1764
1765
1766 Strain fitness (log2 ratio)
-2
-1
0
1 at 1764.859 kb on - strand, within PGA1_c16900 at 1765.189 kb on + strand, within PGA1_c16900 at 1765.189 kb on + strand, within PGA1_c16900 at 1765.192 kb on - strand, within PGA1_c16900 at 1765.206 kb on + strand, within PGA1_c16900 at 1765.206 kb on + strand, within PGA1_c16900 at 1765.206 kb on + strand, within PGA1_c16900 at 1765.206 kb on + strand, within PGA1_c16900 at 1765.214 kb on - strand, within PGA1_c16900 at 1765.214 kb on - strand, within PGA1_c16900 at 1765.216 kb on - strand, within PGA1_c16900 at 1765.290 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,764,859 - PGA1_c16900 0.30 -0.6 1,765,189 + PGA1_c16900 0.81 -1.2 1,765,189 + PGA1_c16900 0.81 -1.9 1,765,192 - PGA1_c16900 0.81 +0.0 1,765,206 + PGA1_c16900 0.83 -0.9 1,765,206 + PGA1_c16900 0.83 -0.4 1,765,206 + PGA1_c16900 0.83 -1.1 1,765,206 + PGA1_c16900 0.83 -0.4 1,765,214 - PGA1_c16900 0.85 -0.1 1,765,214 - PGA1_c16900 0.85 -0.6 1,765,216 - PGA1_c16900 0.85 -1.6 1,765,290 + -0.4
Or see this region's nucleotide sequence