Strain Fitness in Marinobacter adhaerens HP15 around HP15_1426

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1424 and HP15_1425 are separated by 113 nucleotidesHP15_1425 and HP15_1426 are separated by 66 nucleotidesHP15_1426 and HP15_1427 are separated by 132 nucleotidesHP15_1427 and HP15_1428 overlap by 8 nucleotidesHP15_1428 and HP15_1429 are separated by 255 nucleotides HP15_1424: HP15_1424 - short-chain dehydrogenase/reductase SDR, at 1,506,633 to 1,507,334 _1424 HP15_1425: HP15_1425 - conserved hypothetical protein, secreted, at 1,507,448 to 1,507,876 _1425 HP15_1426: HP15_1426 - 6-aminohexanoate-dimer hydrolase, at 1,507,943 to 1,508,941 _1426 HP15_1427: HP15_1427 - protein belonging to uncharacterized protein family UPF0060, at 1,509,074 to 1,509,406 _1427 HP15_1428: HP15_1428 - hypothetical protein, at 1,509,399 to 1,509,590 _1428 HP15_1429: HP15_1429 - DinB family protein, at 1,509,846 to 1,510,388 _1429 Position (kb) 1507 1508 1509Strain fitness (log2 ratio) -1 0 1 2at 1507.114 kb on + strand, within HP15_1424at 1507.122 kb on - strand, within HP15_1424at 1507.122 kb on - strand, within HP15_1424at 1507.151 kb on + strand, within HP15_1424at 1507.151 kb on + strand, within HP15_1424at 1507.337 kb on + strandat 1507.419 kb on + strandat 1507.422 kb on - strandat 1507.438 kb on + strandat 1507.438 kb on + strandat 1507.446 kb on - strandat 1507.578 kb on + strand, within HP15_1425at 1507.614 kb on + strand, within HP15_1425at 1507.701 kb on - strand, within HP15_1425at 1507.845 kb on + strandat 1507.853 kb on - strandat 1508.029 kb on + strandat 1508.037 kb on - strandat 1508.037 kb on - strandat 1508.565 kb on - strand, within HP15_1426at 1508.721 kb on + strand, within HP15_1426at 1508.721 kb on + strand, within HP15_1426at 1508.826 kb on + strand, within HP15_1426at 1508.903 kb on + strandat 1508.941 kb on - strandat 1508.943 kb on + strandat 1508.951 kb on - strandat 1509.032 kb on - strandat 1509.126 kb on - strand, within HP15_1427at 1509.197 kb on + strand, within HP15_1427at 1509.205 kb on - strand, within HP15_1427at 1509.217 kb on - strand, within HP15_1427at 1509.286 kb on - strand, within HP15_1427at 1509.483 kb on + strand, within HP15_1428at 1509.484 kb on - strand, within HP15_1428at 1509.510 kb on - strand, within HP15_1428at 1509.603 kb on + strandat 1509.618 kb on + strandat 1509.626 kb on - strandat 1509.649 kb on + strandat 1509.757 kb on - strandat 1509.763 kb on + strandat 1509.856 kb on + strandat 1509.868 kb on - strandat 1509.910 kb on + strand, within HP15_1429at 1509.920 kb on + strand, within HP15_1429

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,507,114 + HP15_1424 0.69 +0.2
1,507,122 - HP15_1424 0.70 +0.4
1,507,122 - HP15_1424 0.70 -0.4
1,507,151 + HP15_1424 0.74 +0.3
1,507,151 + HP15_1424 0.74 -0.1
1,507,337 + -0.3
1,507,419 + -0.4
1,507,422 - +2.1
1,507,438 + -0.2
1,507,438 + -0.2
1,507,446 - -1.0
1,507,578 + HP15_1425 0.30 -0.4
1,507,614 + HP15_1425 0.39 +0.1
1,507,701 - HP15_1425 0.59 -0.0
1,507,845 + -0.8
1,507,853 - +0.8
1,508,029 + -1.0
1,508,037 - -0.2
1,508,037 - +0.2
1,508,565 - HP15_1426 0.62 +0.1
1,508,721 + HP15_1426 0.78 +0.1
1,508,721 + HP15_1426 0.78 +0.5
1,508,826 + HP15_1426 0.88 +1.2
1,508,903 + +0.6
1,508,941 - +1.0
1,508,943 + +0.3
1,508,951 - +1.8
1,509,032 - -0.7
1,509,126 - HP15_1427 0.16 -0.3
1,509,197 + HP15_1427 0.37 +0.3
1,509,205 - HP15_1427 0.39 -0.5
1,509,217 - HP15_1427 0.43 +0.5
1,509,286 - HP15_1427 0.64 -0.2
1,509,483 + HP15_1428 0.44 -0.8
1,509,484 - HP15_1428 0.44 -1.2
1,509,510 - HP15_1428 0.58 -0.5
1,509,603 + -0.5
1,509,618 + +0.8
1,509,626 - -0.6
1,509,649 + +0.1
1,509,757 - -0.4
1,509,763 + -0.5
1,509,856 + -0.7
1,509,868 - -0.0
1,509,910 + HP15_1429 0.12 -0.0
1,509,920 + HP15_1429 0.14 +1.1

Or see this region's nucleotide sequence