Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14700 and PGA1_c14710 are separated by 216 nucleotides PGA1_c14710 and PGA1_c14720 are separated by 73 nucleotides PGA1_c14720 and PGA1_c14730 are separated by 77 nucleotides
PGA1_c14700: PGA1_c14700 - hypothetical protein, at 1,524,401 to 1,524,727
_c14700
PGA1_c14710: PGA1_c14710 - hypoxanthine-guanine phosphoribosyltransferase Hpt, at 1,524,944 to 1,525,489
_c14710
PGA1_c14720: PGA1_c14720 - Oligoketide cyclase/lipid transport protein, at 1,525,563 to 1,526,009
_c14720
PGA1_c14730: PGA1_c14730 - ammonia channel, at 1,526,087 to 1,527,268
_c14730
Position (kb)
1525
1526
1527 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1524.620 kb on + strand, within PGA1_c14700 at 1524.653 kb on - strand, within PGA1_c14700 at 1524.699 kb on - strand at 1524.711 kb on + strand at 1524.764 kb on + strand at 1524.828 kb on - strand at 1524.861 kb on - strand at 1525.050 kb on - strand, within PGA1_c14710 at 1525.128 kb on - strand, within PGA1_c14710 at 1525.146 kb on + strand, within PGA1_c14710 at 1525.170 kb on - strand, within PGA1_c14710 at 1525.378 kb on + strand, within PGA1_c14710 at 1525.421 kb on - strand, within PGA1_c14710 at 1525.559 kb on + strand at 1525.592 kb on + strand at 1525.600 kb on - strand at 1525.610 kb on - strand, within PGA1_c14720 at 1525.817 kb on - strand, within PGA1_c14720 at 1525.998 kb on + strand at 1526.016 kb on - strand at 1526.083 kb on + strand at 1526.091 kb on - strand at 1526.096 kb on - strand at 1526.124 kb on + strand at 1526.132 kb on - strand at 1526.377 kb on + strand, within PGA1_c14730 at 1526.494 kb on + strand, within PGA1_c14730 at 1526.538 kb on - strand, within PGA1_c14730 at 1526.568 kb on - strand, within PGA1_c14730 at 1526.597 kb on - strand, within PGA1_c14730 at 1526.635 kb on + strand, within PGA1_c14730 at 1526.640 kb on + strand, within PGA1_c14730 at 1526.645 kb on + strand, within PGA1_c14730 at 1526.648 kb on - strand, within PGA1_c14730 at 1526.648 kb on - strand, within PGA1_c14730 at 1526.648 kb on - strand, within PGA1_c14730 at 1526.710 kb on + strand, within PGA1_c14730 at 1526.710 kb on + strand, within PGA1_c14730 at 1526.710 kb on + strand, within PGA1_c14730 at 1526.710 kb on + strand, within PGA1_c14730 at 1526.861 kb on + strand, within PGA1_c14730 at 1526.861 kb on + strand, within PGA1_c14730 at 1526.866 kb on + strand, within PGA1_c14730 at 1526.867 kb on - strand, within PGA1_c14730 at 1526.869 kb on - strand, within PGA1_c14730 at 1526.925 kb on - strand, within PGA1_c14730 at 1526.938 kb on + strand, within PGA1_c14730 at 1526.941 kb on - strand, within PGA1_c14730 at 1526.946 kb on - strand, within PGA1_c14730 at 1526.978 kb on + strand, within PGA1_c14730 at 1526.985 kb on + strand, within PGA1_c14730 at 1526.997 kb on + strand, within PGA1_c14730
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,524,620 + PGA1_c14700 0.67 +0.2 1,524,653 - PGA1_c14700 0.77 +0.1 1,524,699 - +0.3 1,524,711 + -1.0 1,524,764 + +0.8 1,524,828 - +1.0 1,524,861 - -0.9 1,525,050 - PGA1_c14710 0.19 -0.4 1,525,128 - PGA1_c14710 0.34 -2.0 1,525,146 + PGA1_c14710 0.37 +1.5 1,525,170 - PGA1_c14710 0.41 -0.5 1,525,378 + PGA1_c14710 0.79 +0.3 1,525,421 - PGA1_c14710 0.87 +1.1 1,525,559 + +1.7 1,525,592 + +0.2 1,525,600 - -1.8 1,525,610 - PGA1_c14720 0.11 -1.0 1,525,817 - PGA1_c14720 0.57 -0.8 1,525,998 + -1.5 1,526,016 - -0.4 1,526,083 + -1.1 1,526,091 - -0.5 1,526,096 - +1.4 1,526,124 + +0.8 1,526,132 - +0.5 1,526,377 + PGA1_c14730 0.25 -1.5 1,526,494 + PGA1_c14730 0.34 -1.8 1,526,538 - PGA1_c14730 0.38 +1.2 1,526,568 - PGA1_c14730 0.41 +0.3 1,526,597 - PGA1_c14730 0.43 -0.1 1,526,635 + PGA1_c14730 0.46 -1.3 1,526,640 + PGA1_c14730 0.47 +2.2 1,526,645 + PGA1_c14730 0.47 +0.2 1,526,648 - PGA1_c14730 0.47 +0.2 1,526,648 - PGA1_c14730 0.47 +1.2 1,526,648 - PGA1_c14730 0.47 -1.2 1,526,710 + PGA1_c14730 0.53 +1.2 1,526,710 + PGA1_c14730 0.53 +0.5 1,526,710 + PGA1_c14730 0.53 +0.4 1,526,710 + PGA1_c14730 0.53 +0.2 1,526,861 + PGA1_c14730 0.65 -0.4 1,526,861 + PGA1_c14730 0.65 +1.1 1,526,866 + PGA1_c14730 0.66 -0.7 1,526,867 - PGA1_c14730 0.66 +0.5 1,526,869 - PGA1_c14730 0.66 -1.0 1,526,925 - PGA1_c14730 0.71 +0.7 1,526,938 + PGA1_c14730 0.72 +1.0 1,526,941 - PGA1_c14730 0.72 -0.5 1,526,946 - PGA1_c14730 0.73 -1.3 1,526,978 + PGA1_c14730 0.75 -1.1 1,526,985 + PGA1_c14730 0.76 -0.7 1,526,997 + PGA1_c14730 0.77 +1.5
Or see this region's nucleotide sequence