Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13450 and PGA1_c13460 are separated by 511 nucleotides PGA1_c13460 and PGA1_c13470 are separated by 93 nucleotides PGA1_c13470 and PGA1_c13480 are separated by 131 nucleotides
PGA1_c13450: PGA1_c13450 - ribonuclease E, at 1,389,883 to 1,392,819
_c13450
PGA1_c13460: PGA1_c13460 - putative sulfurtransferase, at 1,393,331 to 1,393,564
_c13460
PGA1_c13470: PGA1_c13470 - cytochrome C biogenesis protein, transmembrane region, at 1,393,658 to 1,394,410
_c13470
PGA1_c13480: PGA1_c13480 - hypothetical protein, at 1,394,542 to 1,395,870
_c13480
Position (kb)
1393
1394 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1392.429 kb on + strand, within PGA1_c13450 at 1392.720 kb on + strand at 1392.880 kb on + strand at 1392.906 kb on - strand at 1392.992 kb on - strand at 1393.177 kb on + strand at 1393.177 kb on + strand at 1393.185 kb on - strand at 1393.185 kb on - strand at 1393.201 kb on + strand at 1393.209 kb on + strand at 1393.217 kb on - strand at 1393.227 kb on + strand at 1393.355 kb on + strand, within PGA1_c13460 at 1393.390 kb on + strand, within PGA1_c13460 at 1393.398 kb on - strand, within PGA1_c13460 at 1393.398 kb on - strand, within PGA1_c13460 at 1393.528 kb on + strand, within PGA1_c13460 at 1393.528 kb on + strand, within PGA1_c13460 at 1393.528 kb on + strand, within PGA1_c13460 at 1393.528 kb on + strand, within PGA1_c13460 at 1393.528 kb on + strand, within PGA1_c13460 at 1393.536 kb on - strand, within PGA1_c13460 at 1393.536 kb on - strand, within PGA1_c13460 at 1393.536 kb on - strand, within PGA1_c13460 at 1393.536 kb on - strand, within PGA1_c13460 at 1393.567 kb on - strand at 1393.585 kb on + strand at 1393.585 kb on + strand at 1393.595 kb on + strand at 1393.603 kb on - strand at 1393.603 kb on - strand at 1393.604 kb on + strand at 1393.604 kb on + strand at 1393.604 kb on + strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.612 kb on - strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.642 kb on + strand at 1393.643 kb on + strand at 1394.412 kb on - strand at 1394.419 kb on + strand at 1394.443 kb on + strand at 1394.443 kb on + strand at 1394.443 kb on + strand at 1394.451 kb on - strand at 1394.451 kb on - strand at 1394.451 kb on - strand at 1394.451 kb on - strand at 1394.451 kb on - strand at 1394.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,392,429 + PGA1_c13450 0.87 -2.7 1,392,720 + -1.3 1,392,880 + -0.3 1,392,906 - +0.2 1,392,992 - +0.5 1,393,177 + +0.5 1,393,177 + -0.5 1,393,185 - +0.1 1,393,185 - -0.3 1,393,201 + -0.2 1,393,209 + +0.2 1,393,217 - +1.0 1,393,227 + +1.3 1,393,355 + PGA1_c13460 0.10 -0.3 1,393,390 + PGA1_c13460 0.25 -0.7 1,393,398 - PGA1_c13460 0.29 -0.7 1,393,398 - PGA1_c13460 0.29 -0.4 1,393,528 + PGA1_c13460 0.84 -1.0 1,393,528 + PGA1_c13460 0.84 -0.2 1,393,528 + PGA1_c13460 0.84 +0.7 1,393,528 + PGA1_c13460 0.84 -0.1 1,393,528 + PGA1_c13460 0.84 +1.5 1,393,536 - PGA1_c13460 0.88 -1.1 1,393,536 - PGA1_c13460 0.88 -1.7 1,393,536 - PGA1_c13460 0.88 +0.6 1,393,536 - PGA1_c13460 0.88 -1.3 1,393,567 - +0.1 1,393,585 + +0.7 1,393,585 + +1.2 1,393,595 + -0.5 1,393,603 - +0.3 1,393,603 - +1.0 1,393,604 + -0.2 1,393,604 + -0.5 1,393,604 + +0.1 1,393,612 - -1.0 1,393,612 - -0.3 1,393,612 - -0.2 1,393,612 - -0.1 1,393,612 - -0.5 1,393,612 - +1.5 1,393,642 + -1.1 1,393,642 + +2.5 1,393,642 + -1.3 1,393,642 + -0.8 1,393,642 + -0.2 1,393,642 + -0.9 1,393,643 + -0.4 1,394,412 - -0.4 1,394,419 + -1.5 1,394,443 + +0.7 1,394,443 + +1.0 1,394,443 + -0.5 1,394,451 - -0.3 1,394,451 - +0.3 1,394,451 - +0.6 1,394,451 - -0.8 1,394,451 - +0.1 1,394,518 - -0.8
Or see this region's nucleotide sequence