Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01320 and PGA1_c01330 are separated by 398 nucleotides PGA1_c01330 and PGA1_c01340 are separated by 116 nucleotides PGA1_c01340 and PGA1_c01350 are separated by 193 nucleotides
PGA1_c01320: PGA1_c01320 - elongation factor Tu, at 124,097 to 125,272
_c01320
PGA1_c01330: PGA1_c01330 - Uncharacterized protein conserved in bacteria, at 125,671 to 126,417
_c01330
PGA1_c01340: PGA1_c01340 - tRNA-Trp, at 126,534 to 126,609
_c01340
PGA1_c01350: PGA1_c01350 - putative UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase, at 126,803 to 128,995
_c01350
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1
2 at 125.401 kb on + strand at 125.401 kb on + strand at 125.401 kb on + strand at 125.401 kb on + strand at 125.401 kb on + strand at 125.401 kb on + strand at 125.401 kb on + strand at 125.409 kb on - strand at 125.409 kb on - strand at 125.409 kb on - strand at 125.409 kb on - strand at 125.409 kb on - strand at 125.409 kb on - strand at 125.411 kb on + strand at 125.411 kb on + strand at 125.424 kb on + strand at 125.488 kb on - strand at 125.489 kb on - strand at 125.526 kb on - strand at 125.526 kb on - strand at 125.526 kb on - strand at 125.588 kb on + strand at 125.588 kb on + strand at 125.588 kb on + strand at 125.588 kb on + strand at 125.588 kb on + strand at 125.594 kb on - strand at 125.596 kb on - strand at 125.692 kb on + strand at 125.692 kb on + strand at 125.700 kb on - strand at 125.759 kb on - strand, within PGA1_c01330 at 125.808 kb on + strand, within PGA1_c01330 at 125.816 kb on - strand, within PGA1_c01330 at 125.821 kb on - strand, within PGA1_c01330 at 125.968 kb on - strand, within PGA1_c01330 at 125.968 kb on - strand, within PGA1_c01330 at 125.968 kb on - strand, within PGA1_c01330 at 126.039 kb on - strand, within PGA1_c01330 at 126.375 kb on + strand at 126.375 kb on + strand at 126.375 kb on + strand at 126.383 kb on - strand at 126.383 kb on - strand at 126.383 kb on - strand at 126.383 kb on - strand at 126.451 kb on + strand at 126.632 kb on + strand at 126.766 kb on + strand at 126.818 kb on - strand at 126.833 kb on - strand at 126.835 kb on + strand at 126.838 kb on - strand at 126.843 kb on - strand at 126.843 kb on - strand at 126.843 kb on - strand at 126.915 kb on + strand at 126.958 kb on + strand at 126.975 kb on + strand at 126.975 kb on + strand at 126.975 kb on + strand at 126.990 kb on + strand at 126.998 kb on - strand at 127.005 kb on + strand at 127.005 kb on + strand at 127.063 kb on - strand, within PGA1_c01350 at 127.071 kb on + strand, within PGA1_c01350 at 127.071 kb on + strand, within PGA1_c01350 at 127.076 kb on + strand, within PGA1_c01350 at 127.076 kb on + strand, within PGA1_c01350 at 127.079 kb on - strand, within PGA1_c01350 at 127.079 kb on - strand, within PGA1_c01350 at 127.084 kb on - strand, within PGA1_c01350 at 127.084 kb on - strand, within PGA1_c01350 at 127.084 kb on - strand, within PGA1_c01350 at 127.192 kb on + strand, within PGA1_c01350 at 127.264 kb on - strand, within PGA1_c01350 at 127.280 kb on + strand, within PGA1_c01350 at 127.281 kb on + strand, within PGA1_c01350 at 127.281 kb on + strand, within PGA1_c01350 at 127.289 kb on - strand, within PGA1_c01350 at 127.289 kb on - strand, within PGA1_c01350 at 127.289 kb on - strand, within PGA1_c01350 at 127.289 kb on - strand, within PGA1_c01350 at 127.315 kb on - strand, within PGA1_c01350 at 127.326 kb on + strand, within PGA1_c01350
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 125,401 + -0.6 125,401 + -0.8 125,401 + +0.2 125,401 + -0.5 125,401 + +1.1 125,401 + +0.8 125,401 + +0.5 125,409 - +0.4 125,409 - -0.2 125,409 - -0.8 125,409 - +0.1 125,409 - -1.5 125,409 - +0.2 125,411 + -1.8 125,411 + +0.4 125,424 + -0.3 125,488 - -0.2 125,489 - +0.7 125,526 - -1.4 125,526 - -1.8 125,526 - -2.5 125,588 + +0.8 125,588 + -0.7 125,588 + -0.1 125,588 + +0.0 125,588 + -0.1 125,594 - +0.7 125,596 - +1.1 125,692 + -0.2 125,692 + +0.5 125,700 - +0.1 125,759 - PGA1_c01330 0.12 -0.2 125,808 + PGA1_c01330 0.18 -2.0 125,816 - PGA1_c01330 0.19 -2.6 125,821 - PGA1_c01330 0.20 -0.6 125,968 - PGA1_c01330 0.40 -0.6 125,968 - PGA1_c01330 0.40 -1.4 125,968 - PGA1_c01330 0.40 -2.0 126,039 - PGA1_c01330 0.49 -0.3 126,375 + -0.2 126,375 + -0.6 126,375 + -1.4 126,383 - -0.8 126,383 - +0.9 126,383 - -0.8 126,383 - +0.5 126,451 + -0.2 126,632 + -1.1 126,766 + +1.8 126,818 - +0.1 126,833 - +1.0 126,835 + +0.2 126,838 - -0.7 126,843 - +0.4 126,843 - +0.3 126,843 - -0.1 126,915 + -0.9 126,958 + -1.0 126,975 + +0.4 126,975 + +0.7 126,975 + +0.8 126,990 + -0.5 126,998 - +1.0 127,005 + +0.6 127,005 + -2.0 127,063 - PGA1_c01350 0.12 -0.4 127,071 + PGA1_c01350 0.12 -0.8 127,071 + PGA1_c01350 0.12 +0.7 127,076 + PGA1_c01350 0.12 +0.6 127,076 + PGA1_c01350 0.12 +0.1 127,079 - PGA1_c01350 0.13 -0.5 127,079 - PGA1_c01350 0.13 +1.0 127,084 - PGA1_c01350 0.13 -0.2 127,084 - PGA1_c01350 0.13 +1.4 127,084 - PGA1_c01350 0.13 -1.6 127,192 + PGA1_c01350 0.18 -1.2 127,264 - PGA1_c01350 0.21 +1.2 127,280 + PGA1_c01350 0.22 +0.1 127,281 + PGA1_c01350 0.22 -0.1 127,281 + PGA1_c01350 0.22 +2.1 127,289 - PGA1_c01350 0.22 -1.5 127,289 - PGA1_c01350 0.22 +0.0 127,289 - PGA1_c01350 0.22 -0.4 127,289 - PGA1_c01350 0.22 -0.8 127,315 - PGA1_c01350 0.23 +2.2 127,326 + PGA1_c01350 0.24 +0.1
Or see this region's nucleotide sequence