Strain Fitness in Dechlorosoma suillum PS around Dsui_3370

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3369 and Dsui_3370 are separated by 49 nucleotidesDsui_3370 and Dsui_3371 are separated by 207 nucleotides Dsui_3369: Dsui_3369 - acyl-CoA dehydrogenase, at 3,610,182 to 3,611,366 _3369 Dsui_3370: Dsui_3370 - hypothetical protein, at 3,611,416 to 3,611,847 _3370 Dsui_3371: Dsui_3371 - putative oxidoreductase, aryl-alcohol dehydrogenase like protein, at 3,612,055 to 3,613,107 _3371 Position (kb) 3611 3612Strain fitness (log2 ratio) -2 -1 0 1at 3610.445 kb on + strand, within Dsui_3369at 3610.524 kb on + strand, within Dsui_3369at 3610.527 kb on + strand, within Dsui_3369at 3610.576 kb on + strand, within Dsui_3369at 3610.764 kb on + strand, within Dsui_3369at 3611.001 kb on + strand, within Dsui_3369at 3611.002 kb on + strand, within Dsui_3369at 3611.049 kb on - strand, within Dsui_3369at 3611.132 kb on + strand, within Dsui_3369at 3611.207 kb on - strandat 3611.266 kb on + strandat 3611.317 kb on + strandat 3611.317 kb on + strandat 3611.340 kb on - strandat 3611.342 kb on - strandat 3611.372 kb on + strandat 3611.373 kb on + strandat 3611.463 kb on - strand, within Dsui_3370at 3611.485 kb on - strandat 3611.489 kb on - strand, within Dsui_3370at 3611.536 kb on + strand, within Dsui_3370at 3611.556 kb on - strand, within Dsui_3370at 3611.616 kb on + strand, within Dsui_3370at 3611.629 kb on + strand, within Dsui_3370at 3611.637 kb on - strand, within Dsui_3370at 3611.648 kb on + strand, within Dsui_3370at 3611.677 kb on + strand, within Dsui_3370at 3611.700 kb on + strand, within Dsui_3370at 3611.753 kb on - strand, within Dsui_3370at 3611.781 kb on - strand, within Dsui_3370at 3611.849 kb on - strandat 3611.985 kb on - strandat 3612.071 kb on + strandat 3612.082 kb on + strandat 3612.133 kb on - strandat 3612.221 kb on - strand, within Dsui_3371at 3612.483 kb on + strand, within Dsui_3371at 3612.491 kb on - strand, within Dsui_3371at 3612.498 kb on + strandat 3612.498 kb on + strand, within Dsui_3371at 3612.506 kb on - strand, within Dsui_3371at 3612.557 kb on + strand, within Dsui_3371at 3612.570 kb on + strandat 3612.623 kb on - strand, within Dsui_3371at 3612.624 kb on + strand, within Dsui_3371at 3612.652 kb on - strand, within Dsui_3371at 3612.710 kb on + strandat 3612.718 kb on - strand, within Dsui_3371at 3612.729 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,610,445 + Dsui_3369 0.22 -0.7
3,610,524 + Dsui_3369 0.29 -0.9
3,610,527 + Dsui_3369 0.29 -0.0
3,610,576 + Dsui_3369 0.33 -0.5
3,610,764 + Dsui_3369 0.49 -0.3
3,611,001 + Dsui_3369 0.69 -0.9
3,611,002 + Dsui_3369 0.69 -0.7
3,611,049 - Dsui_3369 0.73 -0.9
3,611,132 + Dsui_3369 0.80 -0.3
3,611,207 - -0.3
3,611,266 + -0.8
3,611,317 + -0.7
3,611,317 + +0.7
3,611,340 - -1.9
3,611,342 - -2.5
3,611,372 + -0.4
3,611,373 + +0.1
3,611,463 - Dsui_3370 0.11 -0.9
3,611,485 - +0.7
3,611,489 - Dsui_3370 0.17 -0.3
3,611,536 + Dsui_3370 0.28 +0.7
3,611,556 - Dsui_3370 0.32 +0.7
3,611,616 + Dsui_3370 0.46 +0.9
3,611,629 + Dsui_3370 0.49 -0.0
3,611,637 - Dsui_3370 0.51 -0.3
3,611,648 + Dsui_3370 0.54 +0.0
3,611,677 + Dsui_3370 0.60 -0.0
3,611,700 + Dsui_3370 0.66 -0.1
3,611,753 - Dsui_3370 0.78 -0.3
3,611,781 - Dsui_3370 0.84 -0.3
3,611,849 - -2.1
3,611,985 - -0.3
3,612,071 + -0.3
3,612,082 + +0.7
3,612,133 - +0.0
3,612,221 - Dsui_3371 0.16 -1.1
3,612,483 + Dsui_3371 0.41 +0.7
3,612,491 - Dsui_3371 0.41 -1.6
3,612,498 + +0.7
3,612,498 + Dsui_3371 0.42 -2.1
3,612,506 - Dsui_3371 0.43 -1.6
3,612,557 + Dsui_3371 0.48 -0.3
3,612,570 + +0.7
3,612,623 - Dsui_3371 0.54 -0.9
3,612,624 + Dsui_3371 0.54 -0.9
3,612,652 - Dsui_3371 0.57 -0.3
3,612,710 + -0.3
3,612,718 - Dsui_3371 0.63 -0.3
3,612,729 + +0.7

Or see this region's nucleotide sequence