Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3220 and Dsui_3221 are separated by 110 nucleotides Dsui_3221 and Dsui_3222 are separated by 39 nucleotides Dsui_3222 and Dsui_3223 are separated by 140 nucleotides
Dsui_3220: Dsui_3220 - PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase, at 3,458,280 to 3,459,923
_3220
Dsui_3221: Dsui_3221 - cytochrome c553, at 3,460,034 to 3,460,720
_3221
Dsui_3222: Dsui_3222 - oligoribonuclease (3'->5' exoribonuclease), at 3,460,760 to 3,461,305
_3222
Dsui_3223: Dsui_3223 - Zn-dependent protease with chaperone function, at 3,461,446 to 3,462,717
_3223
Position (kb)
3460
3461
3462 Strain fitness (log2 ratio)
-1
0
1 at 3459.916 kb on - strand at 3459.974 kb on + strand at 3459.985 kb on + strand at 3460.030 kb on - strand at 3460.032 kb on + strand at 3460.040 kb on - strand at 3460.040 kb on - strand at 3460.113 kb on - strand, within Dsui_3221 at 3460.302 kb on + strand, within Dsui_3221 at 3460.302 kb on + strand, within Dsui_3221 at 3460.314 kb on + strand, within Dsui_3221 at 3460.356 kb on + strand at 3460.401 kb on - strand, within Dsui_3221 at 3460.444 kb on - strand, within Dsui_3221 at 3460.498 kb on - strand, within Dsui_3221 at 3460.660 kb on + strand at 3460.673 kb on + strand at 3460.673 kb on + strand at 3460.680 kb on + strand at 3460.688 kb on - strand at 3460.722 kb on + strand at 3460.726 kb on + strand at 3461.345 kb on + strand at 3461.353 kb on - strand at 3461.356 kb on + strand at 3461.393 kb on + strand at 3461.394 kb on + strand at 3461.480 kb on + strand at 3461.484 kb on - strand at 3461.522 kb on - strand at 3461.537 kb on - strand at 3461.580 kb on + strand, within Dsui_3223 at 3461.617 kb on + strand, within Dsui_3223 at 3461.657 kb on + strand, within Dsui_3223 at 3461.672 kb on + strand, within Dsui_3223 at 3461.750 kb on + strand, within Dsui_3223 at 3461.758 kb on - strand, within Dsui_3223 at 3461.797 kb on - strand, within Dsui_3223 at 3461.858 kb on + strand, within Dsui_3223 at 3461.858 kb on + strand, within Dsui_3223 at 3461.863 kb on + strand, within Dsui_3223 at 3461.918 kb on + strand, within Dsui_3223 at 3461.962 kb on - strand at 3461.978 kb on + strand, within Dsui_3223 at 3461.986 kb on - strand at 3462.152 kb on + strand, within Dsui_3223 at 3462.219 kb on + strand, within Dsui_3223 at 3462.249 kb on + strand, within Dsui_3223 at 3462.280 kb on - strand, within Dsui_3223 at 3462.286 kb on - strand at 3462.287 kb on + strand, within Dsui_3223
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 3,459,916 - +0.6 3,459,974 + -0.5 3,459,985 + +0.3 3,460,030 - -0.2 3,460,032 + +0.6 3,460,040 - +0.0 3,460,040 - -0.4 3,460,113 - Dsui_3221 0.11 +0.2 3,460,302 + Dsui_3221 0.39 -1.7 3,460,302 + Dsui_3221 0.39 -0.4 3,460,314 + Dsui_3221 0.41 -1.4 3,460,356 + -0.4 3,460,401 - Dsui_3221 0.53 -0.1 3,460,444 - Dsui_3221 0.60 -0.0 3,460,498 - Dsui_3221 0.68 -0.1 3,460,660 + +1.6 3,460,673 + -0.4 3,460,673 + -0.4 3,460,680 + -1.7 3,460,688 - -0.1 3,460,722 + +0.6 3,460,726 + +0.6 3,461,345 + -0.6 3,461,353 - +0.6 3,461,356 + +0.4 3,461,393 + -0.9 3,461,394 + -1.2 3,461,480 + -0.3 3,461,484 - -1.7 3,461,522 - -0.4 3,461,537 - +0.6 3,461,580 + Dsui_3223 0.11 -1.1 3,461,617 + Dsui_3223 0.13 -0.2 3,461,657 + Dsui_3223 0.17 +0.2 3,461,672 + Dsui_3223 0.18 -0.9 3,461,750 + Dsui_3223 0.24 +0.3 3,461,758 - Dsui_3223 0.25 +0.6 3,461,797 - Dsui_3223 0.28 -0.4 3,461,858 + Dsui_3223 0.32 -0.3 3,461,858 + Dsui_3223 0.32 +0.8 3,461,863 + Dsui_3223 0.33 +0.1 3,461,918 + Dsui_3223 0.37 -0.3 3,461,962 - +0.6 3,461,978 + Dsui_3223 0.42 -0.3 3,461,986 - +0.6 3,462,152 + Dsui_3223 0.56 -0.4 3,462,219 + Dsui_3223 0.61 -0.6 3,462,249 + Dsui_3223 0.63 -0.3 3,462,280 - Dsui_3223 0.66 +0.6 3,462,286 - +0.6 3,462,287 + Dsui_3223 0.66 -0.9
Or see this region's nucleotide sequence