Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3215 and Dsui_3216 are separated by 15 nucleotides Dsui_3216 and Dsui_3217 are separated by 230 nucleotides Dsui_3217 and Dsui_3218 are separated by 301 nucleotides
Dsui_3215: Dsui_3215 - Inactivated superfamily I helicase, at 3,452,596 to 3,455,388
_3215
Dsui_3216: Dsui_3216 - ferredoxin, at 3,455,404 to 3,455,727
_3216
Dsui_3217: Dsui_3217 - thioredoxin, at 3,455,958 to 3,456,284
_3217
Dsui_3218: Dsui_3218 - transcription termination factor Rho, at 3,456,586 to 3,457,848
_3218
Position (kb)
3455
3456 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3455.481 kb on - strand, within Dsui_3216 at 3455.722 kb on + strand at 3455.730 kb on - strand at 3455.730 kb on - strand at 3455.730 kb on - strand at 3455.866 kb on + strand at 3455.900 kb on + strand at 3456.278 kb on + strand at 3456.278 kb on + strand at 3456.286 kb on + strand at 3456.287 kb on + strand at 3456.431 kb on + strand at 3456.457 kb on + strand at 3456.457 kb on + strand at 3456.467 kb on + strand at 3456.543 kb on + strand at 3456.576 kb on + strand at 3456.581 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 3,455,481 - Dsui_3216 0.24 -0.9 3,455,722 + +0.7 3,455,730 - +1.7 3,455,730 - -2.7 3,455,730 - -1.9 3,455,866 + -0.3 3,455,900 + -1.5 3,456,278 + -1.2 3,456,278 + -1.3 3,456,286 + -0.8 3,456,287 + -1.7 3,456,431 + -0.2 3,456,457 + -0.5 3,456,457 + -0.8 3,456,467 + +0.1 3,456,543 + -0.3 3,456,576 + -2.6 3,456,581 + -2.9
Or see this region's nucleotide sequence