Strain Fitness in Dechlorosoma suillum PS around Dsui_2816

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2814 and Dsui_2815 are separated by 256 nucleotidesDsui_2815 and Dsui_2816 are separated by 110 nucleotidesDsui_2816 and Dsui_2817 are separated by 184 nucleotides Dsui_2814: Dsui_2814 - polyphosphate kinase 1, at 2,988,455 to 2,990,563 _2814 Dsui_2815: Dsui_2815 - putative flavoprotein, at 2,990,820 to 2,991,386 _2815 Dsui_2816: Dsui_2816 - (p)ppGpp synthetase, RelA/SpoT family, at 2,991,497 to 2,993,719 _2816 Dsui_2817: Dsui_2817 - DMT(drug/metabolite transporter) superfamily permease, at 2,993,904 to 2,994,830 _2817 Position (kb) 2991 2992 2993 2994Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2990.512 kb on + strandat 2990.697 kb on + strandat 2990.747 kb on + strandat 2990.747 kb on + strandat 2990.755 kb on - strandat 2990.755 kb on - strandat 2990.798 kb on - strandat 2990.853 kb on - strandat 2990.871 kb on - strandat 2990.916 kb on + strand, within Dsui_2815at 2991.015 kb on + strand, within Dsui_2815at 2991.118 kb on + strand, within Dsui_2815at 2991.219 kb on + strand, within Dsui_2815at 2991.227 kb on - strand, within Dsui_2815at 2991.262 kb on - strand, within Dsui_2815at 2991.296 kb on + strand, within Dsui_2815at 2991.363 kb on + strandat 2991.388 kb on - strandat 2991.468 kb on - strandat 2991.570 kb on - strandat 2991.804 kb on - strand, within Dsui_2816at 2991.836 kb on - strand, within Dsui_2816at 2992.278 kb on - strand, within Dsui_2816at 2992.349 kb on - strand, within Dsui_2816at 2992.458 kb on - strand, within Dsui_2816at 2992.524 kb on - strand, within Dsui_2816at 2992.701 kb on - strand, within Dsui_2816at 2992.825 kb on - strand, within Dsui_2816at 2992.882 kb on - strand, within Dsui_2816at 2992.882 kb on - strand, within Dsui_2816at 2993.021 kb on - strand, within Dsui_2816at 2993.573 kb on - strandat 2993.687 kb on - strandat 2993.702 kb on - strandat 2993.876 kb on + strandat 2993.876 kb on + strandat 2993.901 kb on + strandat 2993.929 kb on - strandat 2993.982 kb on + strandat 2994.072 kb on + strand, within Dsui_2817at 2994.180 kb on + strand, within Dsui_2817at 2994.180 kb on + strand, within Dsui_2817at 2994.183 kb on + strand, within Dsui_2817at 2994.185 kb on + strand, within Dsui_2817at 2994.193 kb on - strand, within Dsui_2817at 2994.315 kb on - strandat 2994.358 kb on + strand, within Dsui_2817at 2994.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,990,512 + +0.5
2,990,697 + -1.8
2,990,747 + +1.0
2,990,747 + +1.0
2,990,755 - -0.0
2,990,755 - +1.0
2,990,798 - +1.0
2,990,853 - -1.0
2,990,871 - -0.6
2,990,916 + Dsui_2815 0.17 -1.4
2,991,015 + Dsui_2815 0.34 -0.6
2,991,118 + Dsui_2815 0.53 -2.4
2,991,219 + Dsui_2815 0.70 -0.4
2,991,227 - Dsui_2815 0.72 +1.0
2,991,262 - Dsui_2815 0.78 -0.6
2,991,296 + Dsui_2815 0.84 -2.0
2,991,363 + +1.0
2,991,388 - -1.8
2,991,468 - +0.2
2,991,570 - -3.3
2,991,804 - Dsui_2816 0.14 -1.8
2,991,836 - Dsui_2816 0.15 -3.1
2,992,278 - Dsui_2816 0.35 -3.7
2,992,349 - Dsui_2816 0.38 -2.3
2,992,458 - Dsui_2816 0.43 -5.6
2,992,524 - Dsui_2816 0.46 -5.1
2,992,701 - Dsui_2816 0.54 -3.0
2,992,825 - Dsui_2816 0.60 -2.2
2,992,882 - Dsui_2816 0.62 -2.6
2,992,882 - Dsui_2816 0.62 -2.8
2,993,021 - Dsui_2816 0.69 -1.8
2,993,573 - -2.8
2,993,687 - -3.2
2,993,702 - -0.6
2,993,876 + -0.0
2,993,876 + +1.0
2,993,901 + +1.0
2,993,929 - +1.0
2,993,982 + -1.4
2,994,072 + Dsui_2817 0.18 -0.6
2,994,180 + Dsui_2817 0.30 -0.0
2,994,180 + Dsui_2817 0.30 -1.4
2,994,183 + Dsui_2817 0.30 +1.0
2,994,185 + Dsui_2817 0.30 +1.0
2,994,193 - Dsui_2817 0.31 -0.6
2,994,315 - -0.0
2,994,358 + Dsui_2817 0.49 -1.4
2,994,413 - +1.0

Or see this region's nucleotide sequence