Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2437 and Dsui_2438 overlap by 17 nucleotides Dsui_2438 and Dsui_2439 overlap by 22 nucleotides Dsui_2439 and Dsui_2440 are separated by 6 nucleotides Dsui_2440 and Dsui_2441 are separated by 9 nucleotides Dsui_2441 and Dsui_2442 are separated by 12 nucleotides
Dsui_2437: Dsui_2437 - pseudouridine synthase, RluA family, at 2,599,184 to 2,600,179
_2437
Dsui_2438: Dsui_2438 - haloacid dehalogenase superfamily enzyme, subfamily IA, at 2,600,163 to 2,600,819
_2438
Dsui_2439: Dsui_2439 - ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase, at 2,600,798 to 2,601,148
_2439
Dsui_2440: Dsui_2440 - ClpP class periplasmic serine protease, at 2,601,155 to 2,602,141
_2440
Dsui_2441: Dsui_2441 - putative methyltransferase, at 2,602,151 to 2,602,879
_2441
Dsui_2442: Dsui_2442 - MAF protein, at 2,602,892 to 2,603,485
_2442
Position (kb)
2601
2602
2603 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2600.210 kb on + strand at 2600.308 kb on + strand, within Dsui_2438 at 2600.523 kb on + strand, within Dsui_2438 at 2600.523 kb on + strand, within Dsui_2438 at 2600.649 kb on + strand, within Dsui_2438 at 2600.692 kb on + strand, within Dsui_2438 at 2600.847 kb on - strand at 2600.919 kb on + strand, within Dsui_2439 at 2600.924 kb on + strand, within Dsui_2439 at 2600.997 kb on + strand, within Dsui_2439 at 2601.006 kb on - strand, within Dsui_2439 at 2601.010 kb on - strand at 2601.161 kb on + strand at 2601.212 kb on + strand at 2601.299 kb on - strand, within Dsui_2440 at 2601.326 kb on + strand, within Dsui_2440 at 2601.427 kb on + strand, within Dsui_2440 at 2601.435 kb on - strand, within Dsui_2440 at 2601.464 kb on + strand, within Dsui_2440 at 2601.489 kb on + strand, within Dsui_2440 at 2601.499 kb on + strand, within Dsui_2440 at 2601.595 kb on + strand, within Dsui_2440 at 2601.735 kb on + strand, within Dsui_2440 at 2601.735 kb on + strand, within Dsui_2440 at 2601.746 kb on + strand, within Dsui_2440 at 2601.861 kb on + strand, within Dsui_2440 at 2601.928 kb on + strand, within Dsui_2440 at 2601.929 kb on + strand, within Dsui_2440 at 2601.936 kb on - strand, within Dsui_2440 at 2602.002 kb on - strand, within Dsui_2440 at 2602.109 kb on - strand at 2602.188 kb on - strand at 2602.230 kb on - strand, within Dsui_2441 at 2602.230 kb on - strand, within Dsui_2441 at 2602.252 kb on + strand, within Dsui_2441 at 2602.252 kb on + strand, within Dsui_2441 at 2602.260 kb on - strand, within Dsui_2441 at 2602.260 kb on - strand, within Dsui_2441 at 2602.260 kb on - strand, within Dsui_2441 at 2602.323 kb on - strand, within Dsui_2441 at 2602.349 kb on - strand, within Dsui_2441 at 2602.359 kb on - strand, within Dsui_2441 at 2602.389 kb on + strand, within Dsui_2441 at 2602.443 kb on + strand, within Dsui_2441 at 2602.462 kb on + strand, within Dsui_2441 at 2602.470 kb on - strand, within Dsui_2441 at 2602.524 kb on + strand, within Dsui_2441 at 2602.549 kb on + strand, within Dsui_2441 at 2602.570 kb on + strand, within Dsui_2441 at 2602.603 kb on + strand, within Dsui_2441 at 2602.611 kb on - strand, within Dsui_2441 at 2602.644 kb on - strand, within Dsui_2441 at 2602.650 kb on + strand, within Dsui_2441 at 2602.650 kb on + strand, within Dsui_2441 at 2602.650 kb on + strand, within Dsui_2441 at 2602.742 kb on - strand, within Dsui_2441 at 2602.749 kb on + strand, within Dsui_2441 at 2602.767 kb on + strand, within Dsui_2441 at 2602.775 kb on - strand, within Dsui_2441 at 2602.775 kb on - strand, within Dsui_2441 at 2602.775 kb on - strand, within Dsui_2441 at 2602.788 kb on + strand, within Dsui_2441 at 2602.796 kb on - strand, within Dsui_2441 at 2602.804 kb on + strand, within Dsui_2441 at 2602.870 kb on - strand at 2602.915 kb on - strand at 2602.929 kb on - strand at 2602.946 kb on - strand at 2602.946 kb on - strand at 2603.033 kb on + strand, within Dsui_2442 at 2603.033 kb on + strand, within Dsui_2442 at 2603.033 kb on + strand, within Dsui_2442 at 2603.033 kb on + strand, within Dsui_2442 at 2603.041 kb on - strand, within Dsui_2442 at 2603.109 kb on - strand, within Dsui_2442 at 2603.109 kb on - strand, within Dsui_2442 at 2603.112 kb on + strand, within Dsui_2442 at 2603.133 kb on + strand, within Dsui_2442
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 2,600,210 + -0.2 2,600,308 + Dsui_2438 0.22 -0.2 2,600,523 + Dsui_2438 0.55 -0.1 2,600,523 + Dsui_2438 0.55 -0.2 2,600,649 + Dsui_2438 0.74 -0.2 2,600,692 + Dsui_2438 0.81 -0.3 2,600,847 - +0.7 2,600,919 + Dsui_2439 0.34 -0.1 2,600,924 + Dsui_2439 0.36 -0.0 2,600,997 + Dsui_2439 0.57 +0.2 2,601,006 - Dsui_2439 0.59 -0.9 2,601,010 - +0.7 2,601,161 + -1.6 2,601,212 + +0.7 2,601,299 - Dsui_2440 0.15 +0.7 2,601,326 + Dsui_2440 0.17 -2.1 2,601,427 + Dsui_2440 0.28 -1.4 2,601,435 - Dsui_2440 0.28 -0.3 2,601,464 + Dsui_2440 0.31 -1.4 2,601,489 + Dsui_2440 0.34 -0.5 2,601,499 + Dsui_2440 0.35 -2.5 2,601,595 + Dsui_2440 0.45 -0.9 2,601,735 + Dsui_2440 0.59 -0.9 2,601,735 + Dsui_2440 0.59 -1.9 2,601,746 + Dsui_2440 0.60 -0.2 2,601,861 + Dsui_2440 0.72 -3.0 2,601,928 + Dsui_2440 0.78 -0.6 2,601,929 + Dsui_2440 0.78 -1.1 2,601,936 - Dsui_2440 0.79 +0.7 2,602,002 - Dsui_2440 0.86 -1.3 2,602,109 - -1.6 2,602,188 - -1.6 2,602,230 - Dsui_2441 0.11 +0.7 2,602,230 - Dsui_2441 0.11 -0.9 2,602,252 + Dsui_2441 0.14 -0.3 2,602,252 + Dsui_2441 0.14 -0.0 2,602,260 - Dsui_2441 0.15 -1.3 2,602,260 - Dsui_2441 0.15 -2.3 2,602,260 - Dsui_2441 0.15 -2.1 2,602,323 - Dsui_2441 0.24 +0.7 2,602,349 - Dsui_2441 0.27 -0.3 2,602,359 - Dsui_2441 0.29 -0.9 2,602,389 + Dsui_2441 0.33 -0.1 2,602,443 + Dsui_2441 0.40 -0.7 2,602,462 + Dsui_2441 0.43 -0.4 2,602,470 - Dsui_2441 0.44 -1.3 2,602,524 + Dsui_2441 0.51 +0.7 2,602,549 + Dsui_2441 0.55 +0.7 2,602,570 + Dsui_2441 0.57 +0.1 2,602,603 + Dsui_2441 0.62 +1.3 2,602,611 - Dsui_2441 0.63 -1.3 2,602,644 - Dsui_2441 0.68 -0.3 2,602,650 + Dsui_2441 0.68 +0.7 2,602,650 + Dsui_2441 0.68 +0.7 2,602,650 + Dsui_2441 0.68 -0.3 2,602,742 - Dsui_2441 0.81 -1.6 2,602,749 + Dsui_2441 0.82 +0.7 2,602,767 + Dsui_2441 0.84 +0.7 2,602,775 - Dsui_2441 0.86 -1.3 2,602,775 - Dsui_2441 0.86 -1.3 2,602,775 - Dsui_2441 0.86 -0.3 2,602,788 + Dsui_2441 0.87 -0.9 2,602,796 - Dsui_2441 0.88 -0.9 2,602,804 + Dsui_2441 0.90 -1.3 2,602,870 - +0.7 2,602,915 - +0.7 2,602,929 - +1.7 2,602,946 - -0.3 2,602,946 - +0.7 2,603,033 + Dsui_2442 0.24 +0.7 2,603,033 + Dsui_2442 0.24 -0.9 2,603,033 + Dsui_2442 0.24 -0.9 2,603,033 + Dsui_2442 0.24 +0.7 2,603,041 - Dsui_2442 0.25 -1.7 2,603,109 - Dsui_2442 0.37 +2.3 2,603,109 - Dsui_2442 0.37 -1.9 2,603,112 + Dsui_2442 0.37 -0.3 2,603,133 + Dsui_2442 0.41 +0.7
Or see this region's nucleotide sequence