Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2027 and Dsui_2028 are separated by 100 nucleotides Dsui_2028 and Dsui_2029 are separated by 182 nucleotides
Dsui_2027: Dsui_2027 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 2,145,500 to 2,147,065
_2027
Dsui_2028: Dsui_2028 - putative endonuclease containing a URI domain, at 2,147,166 to 2,147,462
_2028
Dsui_2029: Dsui_2029 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,147,645 to 2,148,565
_2029
Position (kb)
2147
2148 Strain fitness (log2 ratio)
-1
0
1 at 2146.199 kb on + strand at 2146.450 kb on + strand, within Dsui_2027 at 2146.541 kb on - strand at 2146.550 kb on + strand, within Dsui_2027 at 2146.625 kb on - strand at 2146.659 kb on + strand at 2146.750 kb on - strand at 2146.821 kb on + strand, within Dsui_2027 at 2146.879 kb on + strand at 2147.004 kb on - strand at 2147.027 kb on + strand at 2147.027 kb on + strand at 2147.323 kb on + strand at 2147.591 kb on - strand at 2147.603 kb on + strand at 2147.604 kb on - strand at 2147.616 kb on - strand at 2147.641 kb on + strand at 2147.658 kb on - strand at 2147.710 kb on - strand at 2147.967 kb on - strand, within Dsui_2029 at 2147.967 kb on - strand, within Dsui_2029 at 2148.089 kb on - strand, within Dsui_2029 at 2148.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 2,146,199 + +1.1 2,146,450 + Dsui_2027 0.61 -0.9 2,146,541 - -0.5 2,146,550 + Dsui_2027 0.67 -0.9 2,146,625 - -0.9 2,146,659 + +1.1 2,146,750 - +1.1 2,146,821 + Dsui_2027 0.84 -0.5 2,146,879 + +0.1 2,147,004 - +0.1 2,147,027 + +1.1 2,147,027 + -0.5 2,147,323 + +1.1 2,147,591 - +1.1 2,147,603 + -0.5 2,147,604 - -0.5 2,147,616 - +0.1 2,147,641 + -1.3 2,147,658 - +1.1 2,147,710 - -0.5 2,147,967 - Dsui_2029 0.35 -0.5 2,147,967 - Dsui_2029 0.35 +0.1 2,148,089 - Dsui_2029 0.48 -0.9 2,148,428 + +1.1
Or see this region's nucleotide sequence