Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1918 and Dsui_1919 are separated by 210 nucleotides Dsui_1919 and Dsui_1920 overlap by 17 nucleotides Dsui_1920 and Dsui_1921 overlap by 23 nucleotides Dsui_1921 and Dsui_1922 are separated by 14 nucleotides
Dsui_1918: Dsui_1918 - TIGR03549 family protein, at 2,019,800 to 2,022,013
_1918
Dsui_1919: Dsui_1919 - Mg chelatase, cobalamin biosynthesis protein CobN, at 2,022,224 to 2,026,201
_1919
Dsui_1920: Dsui_1920 - hypothetical protein, at 2,026,185 to 2,026,526
_1920
Dsui_1921: Dsui_1921 - biopolymer transport protein, at 2,026,504 to 2,027,112
_1921
Dsui_1922: Dsui_1922 - outer membrane receptor for ferrienterochelin and colicins, at 2,027,127 to 2,029,406
_1922
Position (kb)
2022
2023
2024
2025
2026
2027 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2021.274 kb on - strand, within Dsui_1918 at 2021.281 kb on - strand, within Dsui_1918 at 2021.309 kb on - strand, within Dsui_1918 at 2021.316 kb on + strand, within Dsui_1918 at 2021.324 kb on - strand, within Dsui_1918 at 2021.324 kb on - strand, within Dsui_1918 at 2021.599 kb on + strand at 2021.608 kb on - strand, within Dsui_1918 at 2021.691 kb on - strand, within Dsui_1918 at 2021.843 kb on - strand at 2021.869 kb on + strand at 2021.927 kb on - strand at 2022.071 kb on + strand at 2022.158 kb on - strand at 2022.281 kb on + strand at 2022.568 kb on + strand at 2022.678 kb on + strand at 2022.704 kb on + strand, within Dsui_1919 at 2022.826 kb on + strand, within Dsui_1919 at 2022.898 kb on - strand at 2022.912 kb on + strand, within Dsui_1919 at 2023.112 kb on - strand at 2023.119 kb on - strand, within Dsui_1919 at 2023.156 kb on - strand at 2023.166 kb on - strand at 2023.203 kb on + strand, within Dsui_1919 at 2023.272 kb on + strand at 2023.390 kb on + strand at 2023.398 kb on - strand, within Dsui_1919 at 2023.407 kb on + strand, within Dsui_1919 at 2023.467 kb on - strand, within Dsui_1919 at 2023.536 kb on - strand at 2023.628 kb on - strand, within Dsui_1919 at 2023.664 kb on - strand, within Dsui_1919 at 2023.701 kb on - strand, within Dsui_1919 at 2023.702 kb on + strand, within Dsui_1919 at 2023.712 kb on - strand, within Dsui_1919 at 2023.753 kb on - strand at 2023.776 kb on - strand, within Dsui_1919 at 2024.027 kb on - strand at 2024.103 kb on - strand at 2024.278 kb on + strand, within Dsui_1919 at 2024.278 kb on + strand, within Dsui_1919 at 2024.393 kb on + strand at 2024.393 kb on + strand at 2024.439 kb on + strand at 2024.482 kb on - strand, within Dsui_1919 at 2024.551 kb on + strand, within Dsui_1919 at 2024.566 kb on + strand, within Dsui_1919 at 2024.678 kb on - strand at 2024.700 kb on + strand at 2024.721 kb on + strand, within Dsui_1919 at 2024.721 kb on + strand at 2024.721 kb on + strand, within Dsui_1919 at 2024.726 kb on + strand at 2024.729 kb on - strand, within Dsui_1919 at 2024.729 kb on - strand, within Dsui_1919 at 2024.729 kb on - strand, within Dsui_1919 at 2024.772 kb on + strand at 2024.930 kb on + strand, within Dsui_1919 at 2024.964 kb on - strand, within Dsui_1919 at 2024.982 kb on + strand at 2025.059 kb on - strand, within Dsui_1919 at 2025.329 kb on + strand at 2025.498 kb on - strand, within Dsui_1919 at 2025.598 kb on + strand, within Dsui_1919 at 2025.622 kb on + strand at 2025.657 kb on + strand at 2025.699 kb on + strand, within Dsui_1919 at 2025.800 kb on + strand, within Dsui_1919 at 2025.945 kb on - strand at 2026.054 kb on + strand at 2026.074 kb on + strand at 2026.106 kb on - strand at 2026.366 kb on + strand, within Dsui_1920 at 2026.366 kb on + strand, within Dsui_1920 at 2026.393 kb on + strand, within Dsui_1920 at 2026.503 kb on + strand at 2026.553 kb on - strand at 2026.800 kb on - strand, within Dsui_1921
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 2,021,274 - Dsui_1918 0.67 +2.0 2,021,281 - Dsui_1918 0.67 +0.8 2,021,309 - Dsui_1918 0.68 -0.3 2,021,316 + Dsui_1918 0.68 +1.0 2,021,324 - Dsui_1918 0.69 +1.0 2,021,324 - Dsui_1918 0.69 +1.0 2,021,599 + +1.0 2,021,608 - Dsui_1918 0.82 +0.4 2,021,691 - Dsui_1918 0.85 +1.0 2,021,843 - -0.6 2,021,869 + -1.6 2,021,927 - +0.0 2,022,071 + +1.0 2,022,158 - +1.0 2,022,281 + +0.0 2,022,568 + -0.6 2,022,678 + +1.0 2,022,704 + Dsui_1919 0.12 -0.6 2,022,826 + Dsui_1919 0.15 +0.0 2,022,898 - +0.0 2,022,912 + Dsui_1919 0.17 -0.6 2,023,112 - +1.0 2,023,119 - Dsui_1919 0.22 -0.6 2,023,156 - +0.0 2,023,166 - +1.0 2,023,203 + Dsui_1919 0.25 +1.0 2,023,272 + +0.0 2,023,390 + -0.6 2,023,398 - Dsui_1919 0.30 -1.6 2,023,407 + Dsui_1919 0.30 +1.0 2,023,467 - Dsui_1919 0.31 -2.1 2,023,536 - +0.0 2,023,628 - Dsui_1919 0.35 -0.6 2,023,664 - Dsui_1919 0.36 -1.0 2,023,701 - Dsui_1919 0.37 +1.0 2,023,702 + Dsui_1919 0.37 +0.0 2,023,712 - Dsui_1919 0.37 -0.6 2,023,753 - +1.0 2,023,776 - Dsui_1919 0.39 +1.0 2,024,027 - +1.0 2,024,103 - +1.0 2,024,278 + Dsui_1919 0.52 +1.0 2,024,278 + Dsui_1919 0.52 +1.0 2,024,393 + +1.0 2,024,393 + +1.0 2,024,439 + +0.0 2,024,482 - Dsui_1919 0.57 +1.0 2,024,551 + Dsui_1919 0.58 -0.6 2,024,566 + Dsui_1919 0.59 -1.0 2,024,678 - +1.0 2,024,700 + +1.0 2,024,721 + Dsui_1919 0.63 -1.0 2,024,721 + +1.0 2,024,721 + Dsui_1919 0.63 -2.0 2,024,726 + +1.0 2,024,729 - Dsui_1919 0.63 +1.0 2,024,729 - Dsui_1919 0.63 +1.0 2,024,729 - Dsui_1919 0.63 -2.7 2,024,772 + +1.0 2,024,930 + Dsui_1919 0.68 +0.0 2,024,964 - Dsui_1919 0.69 -1.0 2,024,982 + +1.0 2,025,059 - Dsui_1919 0.71 -0.6 2,025,329 + +1.0 2,025,498 - Dsui_1919 0.82 +0.0 2,025,598 + Dsui_1919 0.85 +1.0 2,025,622 + +0.0 2,025,657 + +1.0 2,025,699 + Dsui_1919 0.87 -0.6 2,025,800 + Dsui_1919 0.90 +1.0 2,025,945 - +1.0 2,026,054 + +0.0 2,026,074 + +1.0 2,026,106 - -0.6 2,026,366 + Dsui_1920 0.53 +1.0 2,026,366 + Dsui_1920 0.53 +1.0 2,026,393 + Dsui_1920 0.61 +0.0 2,026,503 + -1.6 2,026,553 - +1.0 2,026,800 - Dsui_1921 0.49 +0.0
Or see this region's nucleotide sequence