Strain Fitness in Dechlorosoma suillum PS around Dsui_1915

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1913 and Dsui_1914 are separated by 218 nucleotidesDsui_1914 and Dsui_1915 overlap by 23 nucleotidesDsui_1915 and Dsui_1916 are separated by 13 nucleotides Dsui_1913: Dsui_1913 - signal transduction histidine kinase, at 2,015,179 to 2,016,441 _1913 Dsui_1914: Dsui_1914 - hypothetical protein, at 2,016,660 to 2,016,908 _1914 Dsui_1915: Dsui_1915 - cytochrome bd-type quinol oxidase, subunit 1, at 2,016,886 to 2,018,433 _1915 Dsui_1916: Dsui_1916 - cytochrome d oxidase cyd, subunit II, at 2,018,447 to 2,019,586 _1916 Position (kb) 2016 2017 2018 2019Strain fitness (log2 ratio) -1 0 1at 2016.035 kb on - strandat 2016.114 kb on + strandat 2016.121 kb on + strand, within Dsui_1913at 2016.258 kb on - strandat 2016.493 kb on - strandat 2016.507 kb on + strandat 2016.609 kb on - strandat 2016.781 kb on - strandat 2016.782 kb on + strandat 2016.837 kb on + strand, within Dsui_1914at 2016.864 kb on - strandat 2016.968 kb on + strandat 2016.976 kb on - strandat 2016.976 kb on - strandat 2017.070 kb on - strandat 2017.172 kb on + strand, within Dsui_1915at 2017.398 kb on + strand, within Dsui_1915at 2017.434 kb on + strand, within Dsui_1915at 2017.442 kb on - strandat 2017.648 kb on - strandat 2017.648 kb on - strand, within Dsui_1915at 2017.707 kb on + strandat 2017.864 kb on + strand, within Dsui_1915at 2017.908 kb on + strandat 2017.938 kb on + strand, within Dsui_1915at 2017.946 kb on - strandat 2017.981 kb on - strand, within Dsui_1915at 2018.123 kb on + strandat 2018.198 kb on + strandat 2018.365 kb on - strandat 2018.427 kb on + strandat 2018.496 kb on - strandat 2018.503 kb on + strandat 2018.799 kb on + strandat 2018.834 kb on + strandat 2018.848 kb on - strand, within Dsui_1916at 2018.929 kb on + strand, within Dsui_1916at 2019.042 kb on - strand, within Dsui_1916at 2019.105 kb on + strand, within Dsui_1916at 2019.249 kb on + strand, within Dsui_1916at 2019.259 kb on + strand, within Dsui_1916at 2019.342 kb on + strandat 2019.396 kb on + strandat 2019.404 kb on - strandat 2019.414 kb on - strandat 2019.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,016,035 - +1.0
2,016,114 + +1.0
2,016,121 + Dsui_1913 0.75 -1.6
2,016,258 - +1.0
2,016,493 - +0.0
2,016,507 + +1.0
2,016,609 - +0.0
2,016,781 - +1.0
2,016,782 + +1.0
2,016,837 + Dsui_1914 0.71 -0.6
2,016,864 - +1.0
2,016,968 + +0.0
2,016,976 - +1.0
2,016,976 - -0.6
2,017,070 - +1.0
2,017,172 + Dsui_1915 0.18 -1.6
2,017,398 + Dsui_1915 0.33 +1.0
2,017,434 + Dsui_1915 0.35 +0.0
2,017,442 - +1.0
2,017,648 - -0.6
2,017,648 - Dsui_1915 0.49 +1.0
2,017,707 + +1.0
2,017,864 + Dsui_1915 0.63 -1.6
2,017,908 + +1.0
2,017,938 + Dsui_1915 0.68 +1.0
2,017,946 - +1.0
2,017,981 - Dsui_1915 0.71 -1.6
2,018,123 + +1.0
2,018,198 + +1.0
2,018,365 - +1.0
2,018,427 + +1.0
2,018,496 - +1.0
2,018,503 + -0.6
2,018,799 + +0.0
2,018,834 + +1.0
2,018,848 - Dsui_1916 0.35 -0.6
2,018,929 + Dsui_1916 0.42 -1.3
2,019,042 - Dsui_1916 0.52 +1.0
2,019,105 + Dsui_1916 0.58 +0.0
2,019,249 + Dsui_1916 0.70 -1.0
2,019,259 + Dsui_1916 0.71 +0.0
2,019,342 + +1.0
2,019,396 + -0.6
2,019,404 - +1.0
2,019,414 - +1.0
2,019,414 - +1.0

Or see this region's nucleotide sequence