Strain Fitness in Dechlorosoma suillum PS around Dsui_1531

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1529 and Dsui_1530 are separated by 31 nucleotidesDsui_1530 and Dsui_1531 overlap by 4 nucleotidesDsui_1531 and Dsui_1532 are separated by 146 nucleotides Dsui_1529: Dsui_1529 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,591,298 to 1,592,008 _1529 Dsui_1530: Dsui_1530 - hypothetical protein, at 1,592,040 to 1,592,327 _1530 Dsui_1531: Dsui_1531 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,592,324 to 1,594,537 _1531 Dsui_1532: Dsui_1532 - fatty-acid desaturase, at 1,594,684 to 1,595,898 _1532 Position (kb) 1592 1593 1594 1595Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1591.352 kb on - strandat 1591.401 kb on - strandat 1591.420 kb on + strandat 1591.475 kb on - strand, within Dsui_1529at 1591.503 kb on + strand, within Dsui_1529at 1591.726 kb on + strand, within Dsui_1529at 1591.772 kb on + strand, within Dsui_1529at 1591.797 kb on - strand, within Dsui_1529at 1591.806 kb on + strandat 1591.809 kb on + strand, within Dsui_1529at 1591.814 kb on - strand, within Dsui_1529at 1591.824 kb on - strand, within Dsui_1529at 1592.128 kb on + strandat 1592.216 kb on + strand, within Dsui_1530at 1592.216 kb on + strand, within Dsui_1530at 1592.224 kb on - strand, within Dsui_1530at 1592.307 kb on + strandat 1592.368 kb on - strandat 1592.598 kb on + strandat 1592.712 kb on - strand, within Dsui_1531at 1592.947 kb on + strandat 1592.982 kb on + strand, within Dsui_1531at 1592.985 kb on - strand, within Dsui_1531at 1593.057 kb on - strand, within Dsui_1531at 1593.086 kb on - strandat 1593.142 kb on - strand, within Dsui_1531at 1593.171 kb on - strand, within Dsui_1531at 1593.203 kb on + strandat 1593.211 kb on - strand, within Dsui_1531at 1593.265 kb on + strand, within Dsui_1531at 1593.326 kb on - strand, within Dsui_1531at 1593.370 kb on + strand, within Dsui_1531at 1593.378 kb on - strand, within Dsui_1531at 1593.416 kb on - strand, within Dsui_1531at 1593.468 kb on + strand, within Dsui_1531at 1593.517 kb on + strandat 1593.525 kb on - strand, within Dsui_1531at 1593.525 kb on - strand, within Dsui_1531at 1593.534 kb on - strand, within Dsui_1531at 1593.549 kb on - strand, within Dsui_1531at 1593.579 kb on + strandat 1593.623 kb on - strand, within Dsui_1531at 1593.720 kb on - strand, within Dsui_1531at 1593.722 kb on + strandat 1593.727 kb on + strand, within Dsui_1531at 1593.730 kb on - strand, within Dsui_1531at 1593.735 kb on - strand, within Dsui_1531at 1593.765 kb on + strandat 1593.802 kb on + strandat 1593.827 kb on + strandat 1593.956 kb on + strandat 1593.965 kb on - strand, within Dsui_1531at 1593.965 kb on - strand, within Dsui_1531at 1594.152 kb on + strandat 1594.193 kb on + strand, within Dsui_1531at 1594.270 kb on + strand, within Dsui_1531at 1594.278 kb on - strand, within Dsui_1531at 1594.278 kb on - strand, within Dsui_1531at 1594.292 kb on - strand, within Dsui_1531at 1594.295 kb on + strand, within Dsui_1531at 1594.329 kb on + strandat 1594.394 kb on + strandat 1594.493 kb on - strandat 1594.493 kb on - strandat 1594.516 kb on + strandat 1594.540 kb on + strandat 1594.670 kb on + strandat 1594.683 kb on - strandat 1594.711 kb on + strandat 1594.744 kb on - strandat 1594.746 kb on + strandat 1594.751 kb on + strandat 1594.796 kb on + strandat 1594.983 kb on + strand, within Dsui_1532at 1594.983 kb on + strand, within Dsui_1532at 1595.033 kb on - strand, within Dsui_1532at 1595.191 kb on + strand, within Dsui_1532at 1595.250 kb on + strand, within Dsui_1532at 1595.250 kb on + strand, within Dsui_1532at 1595.258 kb on - strand, within Dsui_1532at 1595.294 kb on + strand, within Dsui_1532at 1595.332 kb on - strand, within Dsui_1532at 1595.392 kb on - strand, within Dsui_1532at 1595.429 kb on + strand, within Dsui_1532at 1595.442 kb on - strand, within Dsui_1532at 1595.501 kb on + strand, within Dsui_1532

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,591,352 - -3.3
1,591,401 - +0.7
1,591,420 + +0.7
1,591,475 - Dsui_1529 0.25 -3.1
1,591,503 + Dsui_1529 0.29 -1.6
1,591,726 + Dsui_1529 0.60 -0.9
1,591,772 + Dsui_1529 0.67 -1.3
1,591,797 - Dsui_1529 0.70 -3.1
1,591,806 + +0.7
1,591,809 + Dsui_1529 0.72 +0.7
1,591,814 - Dsui_1529 0.73 -3.8
1,591,824 - Dsui_1529 0.74 -3.5
1,592,128 + +0.7
1,592,216 + Dsui_1530 0.61 -0.3
1,592,216 + Dsui_1530 0.61 +0.7
1,592,224 - Dsui_1530 0.64 -0.9
1,592,307 + -0.9
1,592,368 - -0.3
1,592,598 + +0.7
1,592,712 - Dsui_1531 0.18 -0.3
1,592,947 + +0.7
1,592,982 + Dsui_1531 0.30 -0.2
1,592,985 - Dsui_1531 0.30 -3.5
1,593,057 - Dsui_1531 0.33 -0.9
1,593,086 - +0.7
1,593,142 - Dsui_1531 0.37 -0.3
1,593,171 - Dsui_1531 0.38 +0.7
1,593,203 + -0.3
1,593,211 - Dsui_1531 0.40 -2.6
1,593,265 + Dsui_1531 0.43 -0.9
1,593,326 - Dsui_1531 0.45 -0.3
1,593,370 + Dsui_1531 0.47 -1.9
1,593,378 - Dsui_1531 0.48 -1.6
1,593,416 - Dsui_1531 0.49 -0.9
1,593,468 + Dsui_1531 0.52 -1.3
1,593,517 + +0.7
1,593,525 - Dsui_1531 0.54 -2.8
1,593,525 - Dsui_1531 0.54 +0.7
1,593,534 - Dsui_1531 0.55 -0.9
1,593,549 - Dsui_1531 0.55 -0.6
1,593,579 + +0.7
1,593,623 - Dsui_1531 0.59 -1.9
1,593,720 - Dsui_1531 0.63 -1.3
1,593,722 + -0.3
1,593,727 + Dsui_1531 0.63 -0.3
1,593,730 - Dsui_1531 0.64 -0.3
1,593,735 - Dsui_1531 0.64 -0.8
1,593,765 + +0.7
1,593,802 + +0.7
1,593,827 + +0.7
1,593,956 + +0.7
1,593,965 - Dsui_1531 0.74 -0.9
1,593,965 - Dsui_1531 0.74 -2.8
1,594,152 + +0.7
1,594,193 + Dsui_1531 0.84 -1.6
1,594,270 + Dsui_1531 0.88 +0.4
1,594,278 - Dsui_1531 0.88 -1.2
1,594,278 - Dsui_1531 0.88 -0.9
1,594,292 - Dsui_1531 0.89 -1.8
1,594,295 + Dsui_1531 0.89 -0.2
1,594,329 + +0.1
1,594,394 + -0.1
1,594,493 - +0.4
1,594,493 - +0.7
1,594,516 + -0.9
1,594,540 + -0.3
1,594,670 + -0.2
1,594,683 - -0.3
1,594,711 + -0.2
1,594,744 - +0.7
1,594,746 + -0.1
1,594,751 + -0.3
1,594,796 + -0.3
1,594,983 + Dsui_1532 0.25 -0.5
1,594,983 + Dsui_1532 0.25 -0.3
1,595,033 - Dsui_1532 0.29 -1.3
1,595,191 + Dsui_1532 0.42 -0.3
1,595,250 + Dsui_1532 0.47 -0.0
1,595,250 + Dsui_1532 0.47 +0.1
1,595,258 - Dsui_1532 0.47 -0.3
1,595,294 + Dsui_1532 0.50 -0.4
1,595,332 - Dsui_1532 0.53 +0.7
1,595,392 - Dsui_1532 0.58 -0.3
1,595,429 + Dsui_1532 0.61 -0.6
1,595,442 - Dsui_1532 0.62 -0.3
1,595,501 + Dsui_1532 0.67 -0.4

Or see this region's nucleotide sequence