Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1403 and Dsui_1404 are separated by 19 nucleotides Dsui_1404 and Dsui_1405 overlap by 4 nucleotides Dsui_1405 and Dsui_1406 are separated by 3 nucleotides Dsui_1406 and Dsui_1407 overlap by 8 nucleotides
Dsui_1403: Dsui_1403 - putative NTP binding protein (contains STAS domain), at 1,462,525 to 1,462,812
_1403
Dsui_1404: Dsui_1404 - ABC-type multidrug transport system, ATPase component, at 1,462,832 to 1,463,755
_1404
Dsui_1405: Dsui_1405 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 1,463,752 to 1,464,507
_1405
Dsui_1406: Dsui_1406 - putative transcriptional regulator, BolA superfamily, at 1,464,511 to 1,464,756
_1406
Dsui_1407: Dsui_1407 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,464,749 to 1,466,002
_1407
Position (kb)
1463
1464
1465 Strain fitness (log2 ratio)
-2
-1
0
1 at 1462.806 kb on + strand at 1462.807 kb on + strand at 1462.990 kb on + strand, within Dsui_1404 at 1463.451 kb on + strand, within Dsui_1404 at 1463.888 kb on + strand, within Dsui_1405 at 1463.942 kb on + strand, within Dsui_1405 at 1464.081 kb on - strand, within Dsui_1405 at 1464.153 kb on + strand, within Dsui_1405 at 1464.241 kb on - strand, within Dsui_1405 at 1464.305 kb on - strand, within Dsui_1405 at 1464.307 kb on + strand, within Dsui_1405 at 1464.329 kb on + strand, within Dsui_1405 at 1464.331 kb on - strand, within Dsui_1405 at 1464.374 kb on - strand at 1464.467 kb on + strand at 1464.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,462,806 + -1.1 1,462,807 + -0.1 1,462,990 + Dsui_1404 0.17 -0.3 1,463,451 + Dsui_1404 0.67 -2.3 1,463,888 + Dsui_1405 0.18 -0.2 1,463,942 + Dsui_1405 0.25 -0.2 1,464,081 - Dsui_1405 0.44 +0.6 1,464,153 + Dsui_1405 0.53 -0.5 1,464,241 - Dsui_1405 0.65 +0.6 1,464,305 - Dsui_1405 0.73 +0.6 1,464,307 + Dsui_1405 0.73 -0.0 1,464,329 + Dsui_1405 0.76 -0.5 1,464,331 - Dsui_1405 0.77 -0.4 1,464,374 - -0.4 1,464,467 + -0.2 1,464,467 + -2.3
Or see this region's nucleotide sequence