Strain Fitness in Dechlorosoma suillum PS around Dsui_1197

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1195 and Dsui_1196 overlap by 4 nucleotidesDsui_1196 and Dsui_1197 are separated by 60 nucleotidesDsui_1197 and Dsui_1198 are separated by 1 nucleotides Dsui_1195: Dsui_1195 - phosphate starvation-inducible protein PhoH, predicted ATPase, at 1,247,540 to 1,248,514 _1195 Dsui_1196: Dsui_1196 - metalloprotein, YbeY/UPF0054 family, at 1,248,511 to 1,248,969 _1196 Dsui_1197: Dsui_1197 - putative Mg2+ and Co2+ transporter CorC, at 1,249,030 to 1,249,875 _1197 Dsui_1198: Dsui_1198 - apolipoprotein N-acyltransferase, at 1,249,877 to 1,251,394 _1198 Position (kb) 1249 1250Strain fitness (log2 ratio) -2 -1 0 1at 1248.035 kb on + strand, within Dsui_1195at 1248.222 kb on + strand, within Dsui_1195at 1248.257 kb on - strand, within Dsui_1195at 1248.268 kb on - strand, within Dsui_1195at 1248.268 kb on - strand, within Dsui_1195at 1248.358 kb on + strand, within Dsui_1195at 1248.361 kb on - strand, within Dsui_1195at 1248.410 kb on + strand, within Dsui_1195at 1248.479 kb on + strandat 1248.515 kb on - strandat 1249.028 kb on - strandat 1249.058 kb on - strandat 1249.073 kb on - strandat 1249.082 kb on + strandat 1249.094 kb on - strandat 1249.196 kb on - strand, within Dsui_1197at 1249.286 kb on - strand, within Dsui_1197at 1249.369 kb on + strand, within Dsui_1197at 1249.377 kb on - strand, within Dsui_1197at 1249.394 kb on - strand, within Dsui_1197at 1249.585 kb on + strand, within Dsui_1197at 1249.621 kb on - strand, within Dsui_1197at 1249.637 kb on - strand, within Dsui_1197at 1249.644 kb on + strand, within Dsui_1197at 1249.801 kb on + strandat 1249.827 kb on + strandat 1249.847 kb on + strandat 1249.924 kb on - strandat 1250.079 kb on + strand, within Dsui_1198at 1250.081 kb on - strandat 1250.169 kb on + strand, within Dsui_1198at 1250.177 kb on - strandat 1250.177 kb on - strandat 1250.283 kb on + strand, within Dsui_1198at 1250.559 kb on + strand, within Dsui_1198at 1250.559 kb on + strand, within Dsui_1198at 1250.645 kb on - strandat 1250.650 kb on - strandat 1250.656 kb on - strandat 1250.850 kb on + strand, within Dsui_1198at 1250.868 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,248,035 + Dsui_1195 0.51 -0.3
1,248,222 + Dsui_1195 0.70 +0.1
1,248,257 - Dsui_1195 0.74 -0.4
1,248,268 - Dsui_1195 0.75 -1.7
1,248,268 - Dsui_1195 0.75 -1.0
1,248,358 + Dsui_1195 0.84 -0.2
1,248,361 - Dsui_1195 0.84 -1.0
1,248,410 + Dsui_1195 0.89 +0.0
1,248,479 + -0.0
1,248,515 - -0.4
1,249,028 - -2.6
1,249,058 - -0.4
1,249,073 - -0.4
1,249,082 + -0.5
1,249,094 - -1.7
1,249,196 - Dsui_1197 0.20 -0.4
1,249,286 - Dsui_1197 0.30 -2.0
1,249,369 + Dsui_1197 0.40 -0.4
1,249,377 - Dsui_1197 0.41 -2.2
1,249,394 - Dsui_1197 0.43 +0.6
1,249,585 + Dsui_1197 0.66 -0.4
1,249,621 - Dsui_1197 0.70 -0.4
1,249,637 - Dsui_1197 0.72 -1.4
1,249,644 + Dsui_1197 0.73 -0.7
1,249,801 + -0.2
1,249,827 + -0.4
1,249,847 + -0.7
1,249,924 - +0.6
1,250,079 + Dsui_1198 0.13 -0.7
1,250,081 - +0.6
1,250,169 + Dsui_1198 0.19 -1.1
1,250,177 - +0.6
1,250,177 - -1.0
1,250,283 + Dsui_1198 0.27 -1.5
1,250,559 + Dsui_1198 0.45 -1.9
1,250,559 + Dsui_1198 0.45 -0.8
1,250,645 - +0.6
1,250,650 - +0.6
1,250,656 - -0.4
1,250,850 + Dsui_1198 0.64 -1.2
1,250,868 - +0.6

Or see this region's nucleotide sequence