Strain Fitness in Dechlorosoma suillum PS around Dsui_0928

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0926 and Dsui_0927 are separated by 3 nucleotidesDsui_0927 and Dsui_0928 are separated by 181 nucleotidesDsui_0928 and Dsui_0929 are separated by 20 nucleotides Dsui_0926: Dsui_0926 - fumarate hydratase, class II, at 954,055 to 955,446 _0926 Dsui_0927: Dsui_0927 - cytochrome c551/c552, at 955,450 to 955,836 _0927 Dsui_0928: Dsui_0928 - cytochrome c oxidase accessory protein FixG, at 956,018 to 957,433 _0928 Dsui_0929: Dsui_0929 - Zn-dependent hydrolase, glyoxylase, at 957,454 to 958,170 _0929 Position (kb) 956 957 958Strain fitness (log2 ratio) -3 -2 -1 0 1at 955.028 kb on + strand, within Dsui_0926at 955.045 kb on + strand, within Dsui_0926at 955.053 kb on - strand, within Dsui_0926at 955.211 kb on + strand, within Dsui_0926at 955.216 kb on - strand, within Dsui_0926at 955.275 kb on + strand, within Dsui_0926at 955.323 kb on + strandat 955.385 kb on - strandat 955.410 kb on + strandat 955.416 kb on + strandat 955.418 kb on - strandat 955.575 kb on - strand, within Dsui_0927at 955.576 kb on - strand, within Dsui_0927at 955.677 kb on + strand, within Dsui_0927at 955.685 kb on - strand, within Dsui_0927at 955.799 kb on + strandat 955.812 kb on - strandat 955.822 kb on - strandat 955.921 kb on + strandat 955.975 kb on + strandat 955.988 kb on - strandat 956.006 kb on + strandat 956.006 kb on + strandat 956.014 kb on + strandat 956.105 kb on + strandat 956.202 kb on - strand, within Dsui_0928at 956.217 kb on + strand, within Dsui_0928at 956.274 kb on - strand, within Dsui_0928at 956.295 kb on - strand, within Dsui_0928at 956.301 kb on + strand, within Dsui_0928at 956.346 kb on + strand, within Dsui_0928at 956.376 kb on + strand, within Dsui_0928at 956.388 kb on - strand, within Dsui_0928at 956.403 kb on - strand, within Dsui_0928at 956.500 kb on - strand, within Dsui_0928at 956.670 kb on + strandat 956.692 kb on - strand, within Dsui_0928at 956.719 kb on + strand, within Dsui_0928at 956.817 kb on - strand, within Dsui_0928at 956.847 kb on - strand, within Dsui_0928at 956.888 kb on - strandat 956.894 kb on + strand, within Dsui_0928at 956.950 kb on + strand, within Dsui_0928at 957.001 kb on - strand, within Dsui_0928at 957.067 kb on + strandat 957.100 kb on - strand, within Dsui_0928at 957.172 kb on + strand, within Dsui_0928at 957.204 kb on - strand, within Dsui_0928at 957.210 kb on + strand, within Dsui_0928at 957.231 kb on + strand, within Dsui_0928at 957.236 kb on + strand, within Dsui_0928at 957.330 kb on + strandat 957.335 kb on + strandat 957.343 kb on - strandat 957.368 kb on - strandat 957.373 kb on + strandat 957.420 kb on - strandat 957.420 kb on - strandat 957.420 kb on - strandat 957.421 kb on + strandat 957.429 kb on + strandat 957.458 kb on - strandat 957.489 kb on + strandat 957.497 kb on - strandat 957.497 kb on - strandat 957.522 kb on - strandat 957.559 kb on + strand, within Dsui_0929at 957.559 kb on + strand, within Dsui_0929at 957.595 kb on + strand, within Dsui_0929at 957.603 kb on - strand, within Dsui_0929at 957.712 kb on + strand, within Dsui_0929at 957.749 kb on - strand, within Dsui_0929at 957.792 kb on - strand, within Dsui_0929at 957.805 kb on + strand, within Dsui_0929at 957.805 kb on + strand, within Dsui_0929at 957.831 kb on + strandat 957.957 kb on + strand, within Dsui_0929at 957.963 kb on + strand, within Dsui_0929at 957.963 kb on + strand, within Dsui_0929at 957.974 kb on + strand, within Dsui_0929at 957.991 kb on + strand, within Dsui_0929at 958.078 kb on - strandat 958.123 kb on + strandat 958.206 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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955,028 + Dsui_0926 0.70 -1.5
955,045 + Dsui_0926 0.71 +0.2
955,053 - Dsui_0926 0.72 +0.2
955,211 + Dsui_0926 0.83 +0.7
955,216 - Dsui_0926 0.83 +0.8
955,275 + Dsui_0926 0.88 +0.1
955,323 + -0.3
955,385 - -1.2
955,410 + -0.2
955,416 + -2.4
955,418 - +0.0
955,575 - Dsui_0927 0.32 -0.0
955,576 - Dsui_0927 0.33 +0.3
955,677 + Dsui_0927 0.59 -0.2
955,685 - Dsui_0927 0.61 +0.0
955,799 + -3.2
955,812 - +0.5
955,822 - +0.8
955,921 + -0.8
955,975 + +0.8
955,988 - +0.8
956,006 + +0.8
956,006 + +0.2
956,014 + -1.2
956,105 + +0.8
956,202 - Dsui_0928 0.13 -1.5
956,217 + Dsui_0928 0.14 -0.2
956,274 - Dsui_0928 0.18 -0.8
956,295 - Dsui_0928 0.20 -0.8
956,301 + Dsui_0928 0.20 -2.0
956,346 + Dsui_0928 0.23 -0.3
956,376 + Dsui_0928 0.25 -0.8
956,388 - Dsui_0928 0.26 +0.8
956,403 - Dsui_0928 0.27 +0.8
956,500 - Dsui_0928 0.34 +0.8
956,670 + +0.8
956,692 - Dsui_0928 0.48 +0.8
956,719 + Dsui_0928 0.50 -0.2
956,817 - Dsui_0928 0.56 -1.8
956,847 - Dsui_0928 0.59 -1.8
956,888 - +0.8
956,894 + Dsui_0928 0.62 +0.8
956,950 + Dsui_0928 0.66 +0.8
957,001 - Dsui_0928 0.69 -1.8
957,067 + +0.8
957,100 - Dsui_0928 0.76 -0.2
957,172 + Dsui_0928 0.81 -1.5
957,204 - Dsui_0928 0.84 +0.8
957,210 + Dsui_0928 0.84 -1.4
957,231 + Dsui_0928 0.86 -0.8
957,236 + Dsui_0928 0.86 -0.8
957,330 + -0.2
957,335 + -1.8
957,343 - +0.8
957,368 - +0.8
957,373 + -1.5
957,420 - -0.2
957,420 - -0.2
957,420 - -0.2
957,421 + +0.8
957,429 + -2.1
957,458 - -0.8
957,489 + -1.2
957,497 - +0.8
957,497 - -0.8
957,522 - +0.8
957,559 + Dsui_0929 0.15 -1.5
957,559 + Dsui_0929 0.15 +0.2
957,595 + Dsui_0929 0.20 -0.2
957,603 - Dsui_0929 0.21 +0.8
957,712 + Dsui_0929 0.36 -0.2
957,749 - Dsui_0929 0.41 -0.2
957,792 - Dsui_0929 0.47 +0.8
957,805 + Dsui_0929 0.49 +0.8
957,805 + Dsui_0929 0.49 -2.4
957,831 + +0.8
957,957 + Dsui_0929 0.70 -1.2
957,963 + Dsui_0929 0.71 -1.8
957,963 + Dsui_0929 0.71 -0.2
957,974 + Dsui_0929 0.73 -0.8
957,991 + Dsui_0929 0.75 +0.8
958,078 - +0.8
958,123 + -0.2
958,206 + -2.6

Or see this region's nucleotide sequence