Strain Fitness in Dechlorosoma suillum PS around Dsui_0616

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0615 and Dsui_0616 are separated by 14 nucleotidesDsui_0616 and Dsui_0617 are separated by 3 nucleotides Dsui_0615: Dsui_0615 - ABC-type transport system, involved in lipoprotein release, permease component, at 609,864 to 611,000 _0615 Dsui_0616: Dsui_0616 - ABC-type antimicrobial peptide transport system, ATPase component, at 611,015 to 611,689 _0616 Dsui_0617: Dsui_0617 - hypothetical protein, at 611,693 to 612,697 _0617 Position (kb) 611 612Strain fitness (log2 ratio) -3 -2 -1 0 1at 610.053 kb on - strand, within Dsui_0615at 610.081 kb on + strand, within Dsui_0615at 610.166 kb on + strand, within Dsui_0615at 610.181 kb on + strand, within Dsui_0615at 610.191 kb on + strand, within Dsui_0615at 610.200 kb on - strand, within Dsui_0615at 610.328 kb on - strand, within Dsui_0615at 610.375 kb on - strand, within Dsui_0615at 610.552 kb on - strand, within Dsui_0615at 610.858 kb on - strand, within Dsui_0615at 611.088 kb on - strandat 611.206 kb on + strand, within Dsui_0616at 611.206 kb on + strand, within Dsui_0616at 611.214 kb on + strand, within Dsui_0616at 611.315 kb on + strand, within Dsui_0616at 611.508 kb on + strand, within Dsui_0616at 611.618 kb on - strand, within Dsui_0616at 612.047 kb on - strand, within Dsui_0617at 612.422 kb on - strand, within Dsui_0617at 612.578 kb on - strandat 612.603 kb on + strandat 612.675 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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610,053 - Dsui_0615 0.17 -1.3
610,081 + Dsui_0615 0.19 +0.3
610,166 + Dsui_0615 0.27 -0.5
610,181 + Dsui_0615 0.28 -1.1
610,191 + Dsui_0615 0.29 +0.0
610,200 - Dsui_0615 0.30 +0.7
610,328 - Dsui_0615 0.41 +0.7
610,375 - Dsui_0615 0.45 -2.1
610,552 - Dsui_0615 0.61 -0.9
610,858 - Dsui_0615 0.87 -3.2
611,088 - +0.7
611,206 + Dsui_0616 0.28 -0.6
611,206 + Dsui_0616 0.28 -0.9
611,214 + Dsui_0616 0.29 -1.1
611,315 + Dsui_0616 0.44 -0.1
611,508 + Dsui_0616 0.73 -0.9
611,618 - Dsui_0616 0.89 -1.3
612,047 - Dsui_0617 0.35 +0.7
612,422 - Dsui_0617 0.73 -1.7
612,578 - -0.3
612,603 + +0.7
612,675 + -2.7

Or see this region's nucleotide sequence