Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03356

Experiment: PYE 0.5x 30C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep3 12 days
3,534,190	+		CCNA_03355	0.53	-0.4
3,534,217	+		CCNA_03355	0.55	+1.4
3,534,246	+		CCNA_03355	0.56	+1.4
3,534,254	-		CCNA_03355	0.56	+0.2
3,534,254	-		CCNA_03355	0.56	-0.0
3,534,254	-		CCNA_03355	0.56	-1.0
3,534,254	-		CCNA_03355	0.56	-0.4
3,534,254	-		CCNA_03355	0.56	-0.7
3,534,254	-		CCNA_03355	0.56	-1.2
3,534,292	-		CCNA_03355	0.58	+0.1
3,534,292	-		CCNA_03355	0.58	+1.4
3,534,301	+		CCNA_03355	0.59	+0.1
3,534,315	-		CCNA_03355	0.60	+0.1
3,534,355	+		CCNA_03355	0.62	-0.4
3,534,355	+		CCNA_03355	0.62	-0.3
3,534,386	+		CCNA_03355	0.63	+0.3
3,534,387	+		CCNA_03355	0.63	-0.7
3,534,401	+		CCNA_03355	0.64	+1.4
3,534,409	-		CCNA_03355	0.64	+0.1
3,534,409	-		CCNA_03355	0.64	+0.8
3,534,409	-		CCNA_03355	0.64	+1.1
3,534,422	+		CCNA_03355	0.65	+2.4
3,534,422	+		CCNA_03355	0.65	+1.4
3,534,426	-		CCNA_03355	0.65	-0.3
3,534,427	+		CCNA_03355	0.65	+0.8
3,534,430	-		CCNA_03355	0.65	+1.3
3,534,430	-		CCNA_03355	0.65	-0.7
3,534,430	-		CCNA_03355	0.65	-0.0
3,534,430	-		CCNA_03355	0.65	-2.0
3,534,430	-		CCNA_03355	0.65	-0.4
3,534,481	-		CCNA_03355	0.68	-0.3
3,534,501	+		CCNA_03355	0.69	+1.4
3,534,507	+		CCNA_03355	0.69	+1.4
3,534,510	-		CCNA_03355	0.69	+0.3
3,534,515	-		CCNA_03355	0.70	-0.7
3,534,515	-		CCNA_03355	0.70	-0.1
3,534,523	-		CCNA_03355	0.70	-1.3
3,534,547	+		CCNA_03355	0.71	+0.4
3,534,547	+		CCNA_03355	0.71	-0.2
3,534,576	-		CCNA_03355	0.73	+0.4
3,534,600	+		CCNA_03355	0.74	+2.4
3,534,623	-		CCNA_03355	0.75	+0.3
3,534,628	-		CCNA_03355	0.75	-0.2
3,534,639	+		CCNA_03355	0.76	+0.4
3,534,639	-		CCNA_03355	0.76	-1.6
3,534,642	-		CCNA_03355	0.76	-2.9
3,534,644	+		CCNA_03355	0.76	+1.4
3,534,652	-		CCNA_03355	0.77	+0.2
3,534,652	-		CCNA_03355	0.77	-0.6
3,534,655	+		CCNA_03355	0.77	-0.7
3,534,658	-		CCNA_03355	0.77	+1.1
3,534,665	+		CCNA_03355	0.77	+0.4
3,534,683	+		CCNA_03355	0.78	+0.4
3,534,683	+		CCNA_03355	0.78	+0.4
3,534,686	-		CCNA_03355	0.78	-0.2
3,534,686	-		CCNA_03355	0.78	+0.7
3,534,686	-		CCNA_03355	0.78	+0.4
3,534,688	+		CCNA_03355	0.78	-0.2
3,534,760	-		CCNA_03355	0.82	+0.9
3,534,805	-		CCNA_03355	0.84	+0.0
3,534,805	-		CCNA_03355	0.84	-0.0
3,534,838	-		CCNA_03355	0.86	-0.2
3,534,843	-		CCNA_03355	0.86	-0.6
3,534,843	-		CCNA_03355	0.86	-2.2
3,534,899	-		CCNA_03355	0.89	+0.6
3,534,900	-		CCNA_03355	0.89	+0.8
3,534,929	-				-1.9
3,534,947	+				+1.1
3,534,965	+				-1.4
3,534,967	+				-0.4
3,534,987	+				+0.8
3,534,990	-				-0.8
3,535,002	+				-0.3
3,535,005	-				-1.3
3,535,005	-				-0.4
3,535,007	+				-1.0
3,535,016	+				-0.4
3,535,024	-				-0.5
3,535,051	+				+2.4
3,535,059	-				-1.4
3,535,059	-				-0.1
3,535,070	-				-2.4
3,535,110	+				-0.6
3,535,120	-				+0.4
3,535,120	-				+0.6
3,535,169	-				+0.3
3,535,239	-		CCNA_03356	0.16	-2.0
3,535,268	-		CCNA_03356	0.25	-1.7
3,535,290	+		CCNA_03356	0.31	-0.4
3,535,290	+		CCNA_03356	0.31	+0.8
3,535,292	-		CCNA_03356	0.32	+0.1
3,535,298	-		CCNA_03356	0.34	-2.2
3,535,308	-		CCNA_03356	0.37	-2.7
3,535,320	+		CCNA_03356	0.41	-0.3
3,535,328	-		CCNA_03356	0.43	-0.4
3,535,342	+		CCNA_03356	0.47	-0.4
3,535,347	-		CCNA_03356	0.49	-1.4
3,535,353	+		CCNA_03356	0.51	+1.4
3,535,371	+		CCNA_03356	0.56	-1.6
3,535,387	+		CCNA_03356	0.61	-0.5
3,535,395	-		CCNA_03356	0.64	-1.5
3,535,436	+		CCNA_03356	0.76	+1.4
3,535,441	+		CCNA_03356	0.78	+0.1
3,535,441	+		CCNA_03356	0.78	+2.4
3,535,444	-		CCNA_03356	0.79	-0.6
3,535,449	-		CCNA_03356	0.80	-0.2
3,535,455	-		CCNA_03356	0.82	-1.8
3,535,481	-				-1.7
3,535,493	-				-1.8
3,535,510	-				-1.9
3,535,510	-				-1.6
3,535,515	+				-2.0
3,535,515	+				+1.0
3,535,523	-				-1.3
3,535,523	-				-1.4
3,535,523	-				-0.6
3,535,533	-				-0.9
3,535,559	-		CCNA_03357	0.11	+0.3
3,535,580	-		CCNA_03357	0.16	-1.4
3,535,600	-		CCNA_03357	0.22	-0.7
3,535,600	-		CCNA_03357	0.22	-1.8
3,535,600	-		CCNA_03357	0.22	-1.2
3,535,600	-		CCNA_03357	0.22	-1.6
3,535,628	-		CCNA_03357	0.29	-0.8
3,535,642	-		CCNA_03357	0.33	-0.7
3,535,658	+		CCNA_03357	0.37	-0.4
3,535,686	+		CCNA_03357	0.44	-1.0
3,535,694	-		CCNA_03357	0.46	-0.9
3,535,700	+		CCNA_03357	0.48	+1.4
3,535,708	-		CCNA_03357	0.50	+0.1
3,535,727	-		CCNA_03357	0.55	-0.5
3,535,740	-		CCNA_03357	0.58	-1.5
3,535,740	-		CCNA_03357	0.58	-0.7
3,535,754	+		CCNA_03357	0.62	-0.9
3,535,754	+		CCNA_03357	0.62	-1.3
3,535,826	-		CCNA_03357	0.80	-0.5
3,535,828	+		CCNA_03357	0.81	-1.8
3,535,834	-		CCNA_03357	0.83	-1.5
3,535,836	-		CCNA_03357	0.83	-1.2
3,535,836	-		CCNA_03357	0.83	-1.0
3,535,857	-		CCNA_03357	0.89	-2.1
3,535,870	+				-0.7
3,535,871	+				-1.0
3,535,872	-				-1.0
3,535,872	-				-0.7
3,535,872	-				-2.0
3,535,879	-				-0.7
3,535,879	-				-3.0
3,535,879	-				-0.7
3,535,879	-				-1.4
3,535,879	-				-1.3
3,535,884	-				-0.7
3,535,942	+				+0.4
3,535,942	+				+1.2
3,535,942	+				+1.1
3,535,942	+				-1.2
3,535,942	+				+0.1
3,535,942	+				+2.4
3,535,943	+				-2.4
3,535,943	+				-0.4
3,535,950	-				+0.1
3,535,950	-				-0.9
3,535,950	-				+0.1
3,535,950	-				-1.2
3,535,950	-				+0.3
3,535,950	-				+0.5
3,535,950	-				+0.0
3,535,950	-				+0.5
3,535,950	-				-0.5
3,535,950	-				-1.3
3,535,951	-				-0.4
3,535,951	-				-0.1
3,535,951	-				+0.9
3,535,978	+				+0.1
3,535,983	+				+2.4
3,535,983	+				-0.9
3,535,983	+				-0.4
3,535,991	-				-0.2
3,535,991	-				-1.0
3,536,001	-				+0.4
3,536,030	-				-0.2
3,536,058	+				-0.5
3,536,066	-				+0.4
3,536,099	+				-0.4