Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01069

Experiment: PYE 0.5x 30C survival rep3 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 30C survival rep3 12 days
1,173,297	+		CCNA_01068	0.35	-3.2
1,173,298	-		CCNA_01068	0.35	-2.5
1,173,304	+		CCNA_01068	0.36	-3.1
1,173,304	+		CCNA_01068	0.36	-3.9
1,173,304	+		CCNA_01068	0.36	-2.8
1,173,304	+		CCNA_01068	0.36	-3.0
1,173,312	-		CCNA_01068	0.37	+0.5
1,173,312	-		CCNA_01068	0.37	-2.9
1,173,338	+		CCNA_01068	0.39	-2.5
1,173,362	-		CCNA_01068	0.40	-1.8
1,173,379	-		CCNA_01068	0.42	-3.9
1,173,394	-		CCNA_01068	0.43	-2.0
1,173,408	-		CCNA_01068	0.44	-2.4
1,173,415	+		CCNA_01068	0.44	-3.1
1,173,415	+		CCNA_01068	0.44	-2.0
1,173,423	-		CCNA_01068	0.45	-2.5
1,173,433	-		CCNA_01068	0.46	-0.6
1,173,441	-		CCNA_01068	0.47	-2.5
1,173,464	+		CCNA_01068	0.48	-2.3
1,173,497	+		CCNA_01068	0.51	-3.8
1,173,505	-		CCNA_01068	0.51	-2.8
1,173,505	-		CCNA_01068	0.51	-5.0
1,173,505	-		CCNA_01068	0.51	-4.1
1,173,505	-		CCNA_01068	0.51	-3.9
1,173,523	+		CCNA_01068	0.53	-2.5
1,173,530	+		CCNA_01068	0.53	-3.9
1,173,530	+		CCNA_01068	0.53	-2.9
1,173,530	+		CCNA_01068	0.53	-1.6
1,173,530	+		CCNA_01068	0.53	-2.9
1,173,530	+		CCNA_01068	0.53	-2.9
1,173,538	-		CCNA_01068	0.54	-1.4
1,173,538	-		CCNA_01068	0.54	-3.0
1,173,583	-		CCNA_01068	0.58	-3.9
1,173,584	-		CCNA_01068	0.58	-4.3
1,173,585	+		CCNA_01068	0.58	-2.7
1,173,586	+		CCNA_01068	0.58	-2.9
1,173,586	+		CCNA_01068	0.58	-3.0
1,173,593	-		CCNA_01068	0.58	-3.8
1,173,594	-		CCNA_01068	0.58	-3.1
1,173,594	-		CCNA_01068	0.58	-2.0
1,173,594	-		CCNA_01068	0.58	-1.7
1,173,594	-		CCNA_01068	0.58	-1.6
1,173,594	-		CCNA_01068	0.58	-0.0
1,173,646	+		CCNA_01068	0.62	-2.7
1,173,677	+		CCNA_01068	0.65	-3.5
1,173,727	-		CCNA_01068	0.69	-2.3
1,173,727	-		CCNA_01068	0.69	-3.5
1,173,775	+		CCNA_01068	0.72	-1.9
1,173,775	+		CCNA_01068	0.72	-1.9
1,173,783	-		CCNA_01068	0.73	-3.3
1,173,788	-		CCNA_01068	0.73	-2.8
1,173,819	-		CCNA_01068	0.76	-3.0
1,173,821	+		CCNA_01068	0.76	-3.3
1,173,821	+				+0.9
1,173,821	+		CCNA_01068	0.76	-3.8
1,173,829	-		CCNA_01068	0.77	-4.4
1,173,829	-		CCNA_01068	0.77	-3.0
1,173,836	+		CCNA_01068	0.77	-2.1
1,173,836	+		CCNA_01068	0.77	-3.5
1,173,836	+		CCNA_01068	0.77	-2.5
1,173,837	-		CCNA_01068	0.77	-2.8
1,173,844	-		CCNA_01068	0.78	-4.0
1,173,844	-		CCNA_01068	0.78	-2.9
1,173,844	-		CCNA_01068	0.78	-2.0
1,173,844	-		CCNA_01068	0.78	-3.6
1,173,851	+		CCNA_01068	0.78	-3.0
1,173,859	-		CCNA_01068	0.79	-3.1
1,173,872	+		CCNA_01068	0.80	-4.0
1,173,880	+		CCNA_01068	0.81	-2.9
1,173,880	+		CCNA_01068	0.81	-0.2
1,173,891	+		CCNA_01068	0.81	-4.7
1,173,912	+		CCNA_01068	0.83	-1.9
1,173,930	-		CCNA_01068	0.84	-2.5
1,173,997	+		CCNA_01068	0.90	-2.1
1,173,997	+		CCNA_01068	0.90	-1.0
1,174,015	+				-1.7
1,174,021	+				-1.3
1,174,021	+				+1.5
1,174,023	-				-4.8
1,174,023	-				-1.5
1,174,029	-				-1.1
1,174,029	-				-4.4
1,174,029	-				-2.3
1,174,043	-				-3.6
1,174,082	+				-2.2
1,174,095	-				-4.9
1,174,118	+				-2.2
1,174,118	+				-1.8
1,174,118	+				-0.4
1,174,118	+				-4.3
1,174,118	+				-3.4
1,174,144	-				-0.4
1,174,173	+				-0.3
1,174,192	+				-2.5
1,174,202	+				-1.0
1,174,210	-				+0.5
1,174,261	+				-0.2
1,174,276	+				+1.1
1,174,293	+				+0.7
1,174,301	-				+0.5
1,174,357	-				-0.1
1,174,379	+				-0.3
1,174,437	-				-2.1
1,174,437	-				-1.0
1,174,467	+		CCNA_01069	0.12	+0.2
1,174,472	+		CCNA_01069	0.12	+0.6
1,174,538	-		CCNA_01069	0.17	-0.7
1,174,562	+		CCNA_01069	0.18	-0.9
1,174,562	+		CCNA_01069	0.18	-0.7
1,174,564	-		CCNA_01069	0.18	+1.5
1,174,570	-		CCNA_01069	0.19	-0.7
1,174,570	-		CCNA_01069	0.19	+0.3
1,174,708	-		CCNA_01069	0.28	+0.1
1,174,715	+		CCNA_01069	0.28	+0.4
1,174,715	+		CCNA_01069	0.28	-0.2
1,174,716	+		CCNA_01069	0.28	-0.2
1,174,745	-		CCNA_01069	0.30	-0.5
1,174,745	-		CCNA_01069	0.30	-0.8
1,174,793	+		CCNA_01069	0.33	+0.1
1,174,801	-		CCNA_01069	0.34	+0.2
1,174,815	+		CCNA_01069	0.35	+0.1
1,174,839	+		CCNA_01069	0.36	+0.7
1,174,847	-		CCNA_01069	0.37	+1.5
1,174,847	-		CCNA_01069	0.37	+0.5
1,174,847	-		CCNA_01069	0.37	-0.1
1,174,859	+		CCNA_01069	0.37	+1.1
1,174,877	+		CCNA_01069	0.39	-0.1
1,174,878	+		CCNA_01069	0.39	+1.0
1,174,913	-		CCNA_01069	0.41	+1.5
1,174,920	-		CCNA_01069	0.41	-0.8
1,174,922	+		CCNA_01069	0.42	+0.4
1,174,927	+		CCNA_01069	0.42	+0.8
1,174,930	-		CCNA_01069	0.42	-0.5
1,174,983	+		CCNA_01069	0.46	+0.1
1,174,998	+		CCNA_01069	0.46	+0.0
1,175,032	-		CCNA_01069	0.49	+0.9
1,175,077	-		CCNA_01069	0.52	+0.5
1,175,077	-		CCNA_01069	0.52	-0.5
1,175,083	-		CCNA_01069	0.52	+1.1
1,175,173	+		CCNA_01069	0.58	+0.5
1,175,173	+		CCNA_01069	0.58	+0.3
1,175,173	+		CCNA_01069	0.58	-0.0
1,175,181	-		CCNA_01069	0.58	+0.2
1,175,181	-		CCNA_01069	0.58	+0.9
1,175,206	+		CCNA_01069	0.60	+0.2
1,175,206	+		CCNA_01069	0.60	+0.6
1,175,206	+		CCNA_01069	0.60	+0.3
1,175,206	+		CCNA_01069	0.60	+0.5
1,175,206	+		CCNA_01069	0.60	+0.6
1,175,312	-		CCNA_01069	0.67	-1.1
1,175,317	+		CCNA_01069	0.67	-0.0
1,175,348	+		CCNA_01069	0.69	+0.7
1,175,350	+		CCNA_01069	0.69	+0.6
1,175,358	-		CCNA_01069	0.70	+0.3
1,175,415	-		CCNA_01069	0.74	-0.4
1,175,420	-		CCNA_01069	0.74	-1.2
1,175,435	-		CCNA_01069	0.75	-0.9
1,175,440	+		CCNA_01069	0.75	-0.2
1,175,462	-		CCNA_01069	0.77	-2.2
1,175,464	-		CCNA_01069	0.77	-0.4
1,175,492	+		CCNA_01069	0.79	-0.2
1,175,500	+		CCNA_01069	0.79	+0.4
1,175,500	-		CCNA_01069	0.79	-1.2
1,175,500	-		CCNA_01069	0.79	+0.2
1,175,516	+		CCNA_01069	0.80	+0.5
1,175,519	-		CCNA_01069	0.80	+0.1
1,175,610	+		CCNA_01069	0.86	-0.6
1,175,652	+		CCNA_01069	0.89	+1.1
1,175,652	+		CCNA_01069	0.89	+0.5
1,175,660	-		CCNA_01069	0.90	+0.0
1,175,662	+		CCNA_01069	0.90	+0.7
1,175,697	+				+0.3
1,175,697	+				+1.0
1,175,734	-				-1.3
1,175,738	+				+1.8
1,175,751	-				-0.6
1,175,766	+				+0.8
1,175,839	+				+0.0
1,176,005	+				+0.7
1,176,010	+				+0.4
1,176,158	-				-1.7
1,176,196	+				+0.7
1,176,214	-				-0.9
1,176,254	+				-1.2
1,176,256	+				-1.1
1,176,330	+				-0.5
1,176,359	+				+1.6
1,176,393	-				+0.9
1,176,470	+				-1.0
1,176,470	+				-0.3
1,176,475	+				+0.1
1,176,500	-				-0.2
1,176,509	-				+0.6
1,176,511	+				-1.8
1,176,539	+				-0.7
1,176,544	+				-1.3
1,176,544	+				-0.7
1,176,544	+				-0.9
1,176,544	+				-0.4
1,176,544	+				-0.5
1,176,549	+				-1.0
1,176,549	+				-0.1
1,176,549	+				+0.7
1,176,552	-				-0.3
1,176,552	-				-0.7
1,176,552	-				-0.0
1,176,552	-				+0.7
1,176,552	-				+0.5
1,176,552	-				+0.2
1,176,557	-				+1.0
1,176,557	-				+0.3
1,176,557	-				-0.6
1,176,557	-				-0.6
1,176,557	-				+0.1
1,176,557	-				-0.1
1,176,557	-				-0.7
1,176,588	+		CCNA_01070	0.11	-0.5
1,176,594	-		CCNA_01070	0.11	+0.2
1,176,606	+		CCNA_01070	0.13	+0.3
1,176,614	-		CCNA_01070	0.14	-0.1
1,176,651	-		CCNA_01070	0.19	+0.8
1,176,656	-		CCNA_01070	0.20	-0.1
1,176,733	-		CCNA_01070	0.30	-0.2
1,176,740	-		CCNA_01070	0.31	+0.2
1,176,760	+		CCNA_01070	0.34	-0.3
1,176,768	-		CCNA_01070	0.35	-1.8
1,176,793	+		CCNA_01070	0.38	+0.7
1,176,796	-		CCNA_01070	0.38	+0.1
1,176,817	+		CCNA_01070	0.41	-0.5