Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00667

Experiment: PYE 0.5x 30C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00665 and CCNA_00666 overlap by 4 nucleotidesCCNA_00666 and CCNA_00667 are separated by 61 nucleotidesCCNA_00667 and CCNA_00668 are separated by 10 nucleotides CCNA_00665: CCNA_00665 - GAF-family sensor histidine kinase, at 721,949 to 723,094 _00665 CCNA_00666: CCNA_00666 - response regulator receiver domain protein, at 723,091 to 723,444 _00666 CCNA_00667: CCNA_00667 - lipopolysaccharide biosynthesis protein, at 723,506 to 724,690 _00667 CCNA_00668: CCNA_00668 - capsular polysaccharide biosynthesis protein, at 724,701 to 725,753 _00668 Position (kb) 723 724 725Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 722.513 kb on - strand, within CCNA_00665at 722.513 kb on - strand, within CCNA_00665at 722.513 kb on - strand, within CCNA_00665at 722.556 kb on + strand, within CCNA_00665at 722.556 kb on + strand, within CCNA_00665at 722.574 kb on - strand, within CCNA_00665at 722.600 kb on - strandat 722.618 kb on - strand, within CCNA_00665at 722.618 kb on - strand, within CCNA_00665at 722.633 kb on + strand, within CCNA_00665at 722.659 kb on + strand, within CCNA_00665at 722.682 kb on + strand, within CCNA_00665at 722.699 kb on + strand, within CCNA_00665at 722.738 kb on + strand, within CCNA_00665at 722.745 kb on - strand, within CCNA_00665at 722.785 kb on + strand, within CCNA_00665at 722.791 kb on - strand, within CCNA_00665at 722.796 kb on + strand, within CCNA_00665at 722.841 kb on - strand, within CCNA_00665at 722.841 kb on - strand, within CCNA_00665at 722.843 kb on + strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.881 kb on + strand, within CCNA_00665at 722.903 kb on + strand, within CCNA_00665at 722.918 kb on + strand, within CCNA_00665at 722.923 kb on + strand, within CCNA_00665at 722.923 kb on + strand, within CCNA_00665at 722.931 kb on - strand, within CCNA_00665at 722.931 kb on - strand, within CCNA_00665at 722.936 kb on - strand, within CCNA_00665at 722.961 kb on + strand, within CCNA_00665at 722.967 kb on + strand, within CCNA_00665at 722.967 kb on + strand, within CCNA_00665at 723.019 kb on + strandat 723.019 kb on + strandat 723.025 kb on - strandat 723.041 kb on - strandat 723.090 kb on + strandat 723.090 kb on + strandat 723.098 kb on - strandat 723.134 kb on - strand, within CCNA_00666at 723.144 kb on + strand, within CCNA_00666at 723.145 kb on + strand, within CCNA_00666at 723.153 kb on - strand, within CCNA_00666at 723.153 kb on - strand, within CCNA_00666at 723.153 kb on - strand, within CCNA_00666at 723.163 kb on + strand, within CCNA_00666at 723.163 kb on + strand, within CCNA_00666at 723.169 kb on - strand, within CCNA_00666at 723.170 kb on + strand, within CCNA_00666at 723.173 kb on - strand, within CCNA_00666at 723.178 kb on - strand, within CCNA_00666at 723.208 kb on + strand, within CCNA_00666at 723.208 kb on + strand, within CCNA_00666at 723.211 kb on - strand, within CCNA_00666at 723.216 kb on - strand, within CCNA_00666at 723.235 kb on - strand, within CCNA_00666at 723.250 kb on + strand, within CCNA_00666at 723.258 kb on + strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.293 kb on + strand, within CCNA_00666at 723.327 kb on - strand, within CCNA_00666at 723.361 kb on + strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.381 kb on - strand, within CCNA_00666at 723.384 kb on + strand, within CCNA_00666at 723.411 kb on + strandat 723.419 kb on - strandat 723.466 kb on - strandat 723.476 kb on - strandat 723.478 kb on + strandat 723.486 kb on - strandat 723.486 kb on - strandat 723.584 kb on + strandat 723.631 kb on - strand, within CCNA_00667at 723.635 kb on - strand, within CCNA_00667at 723.635 kb on - strand, within CCNA_00667at 723.671 kb on + strand, within CCNA_00667at 723.691 kb on - strand, within CCNA_00667at 723.755 kb on - strand, within CCNA_00667at 723.755 kb on - strand, within CCNA_00667at 723.768 kb on + strand, within CCNA_00667at 723.781 kb on - strand, within CCNA_00667at 723.788 kb on - strand, within CCNA_00667at 723.788 kb on - strand, within CCNA_00667at 723.792 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.879 kb on - strand, within CCNA_00667at 723.889 kb on + strand, within CCNA_00667at 723.897 kb on - strand, within CCNA_00667at 723.897 kb on - strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.994 kb on - strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.035 kb on + strand, within CCNA_00667at 724.126 kb on + strand, within CCNA_00667at 724.134 kb on - strand, within CCNA_00667at 724.134 kb on - strand, within CCNA_00667at 724.150 kb on - strand, within CCNA_00667at 724.202 kb on - strand, within CCNA_00667at 724.231 kb on + strand, within CCNA_00667at 724.255 kb on + strand, within CCNA_00667at 724.255 kb on + strandat 724.255 kb on + strand, within CCNA_00667at 724.260 kb on + strand, within CCNA_00667at 724.268 kb on - strand, within CCNA_00667at 724.324 kb on - strand, within CCNA_00667at 724.381 kb on + strand, within CCNA_00667at 724.386 kb on - strand, within CCNA_00667at 724.427 kb on - strand, within CCNA_00667at 724.427 kb on - strand, within CCNA_00667at 724.432 kb on - strand, within CCNA_00667at 724.500 kb on - strand, within CCNA_00667at 724.564 kb on + strand, within CCNA_00667at 724.582 kb on - strandat 724.588 kb on - strandat 724.601 kb on - strandat 724.626 kb on + strandat 724.658 kb on - strandat 724.685 kb on + strandat 724.697 kb on + strandat 724.705 kb on - strandat 724.705 kb on - strandat 724.710 kb on - strandat 724.710 kb on - strandat 724.821 kb on + strand, within CCNA_00668at 724.834 kb on - strand, within CCNA_00668at 724.834 kb on - strand, within CCNA_00668at 724.876 kb on - strand, within CCNA_00668at 724.876 kb on - strand, within CCNA_00668at 724.896 kb on + strand, within CCNA_00668at 724.948 kb on + strand, within CCNA_00668at 724.948 kb on + strand, within CCNA_00668at 724.968 kb on + strand, within CCNA_00668at 724.968 kb on + strand, within CCNA_00668at 724.969 kb on + strand, within CCNA_00668at 724.970 kb on + strand, within CCNA_00668at 724.970 kb on + strand, within CCNA_00668at 724.976 kb on - strand, within CCNA_00668at 725.040 kb on - strand, within CCNA_00668at 725.064 kb on - strand, within CCNA_00668at 725.224 kb on + strand, within CCNA_00668at 725.228 kb on + strand, within CCNA_00668at 725.229 kb on + strand, within CCNA_00668at 725.232 kb on - strand, within CCNA_00668at 725.234 kb on + strand, within CCNA_00668at 725.237 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.259 kb on - strand, within CCNA_00668at 725.264 kb on - strand, within CCNA_00668at 725.350 kb on + strand, within CCNA_00668at 725.359 kb on + strand, within CCNA_00668at 725.367 kb on - strand, within CCNA_00668at 725.377 kb on - strand, within CCNA_00668at 725.382 kb on + strand, within CCNA_00668at 725.391 kb on - strand, within CCNA_00668at 725.415 kb on + strand, within CCNA_00668at 725.437 kb on + strand, within CCNA_00668at 725.445 kb on - strand, within CCNA_00668at 725.458 kb on + strand, within CCNA_00668at 725.458 kb on + strand, within CCNA_00668at 725.458 kb on + strand, within CCNA_00668at 725.458 kb on + strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.466 kb on - strand, within CCNA_00668at 725.469 kb on + strand, within CCNA_00668at 725.493 kb on + strand, within CCNA_00668at 725.527 kb on - strandat 725.534 kb on - strand, within CCNA_00668at 725.561 kb on + strand, within CCNA_00668at 725.561 kb on + strand, within CCNA_00668at 725.564 kb on - strand, within CCNA_00668at 725.565 kb on - strand, within CCNA_00668at 725.565 kb on - strand, within CCNA_00668at 725.605 kb on + strand, within CCNA_00668

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep3 12 days
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722,513 - CCNA_00665 0.49 +0.6
722,513 - CCNA_00665 0.49 +0.4
722,513 - CCNA_00665 0.49 -0.1
722,556 + CCNA_00665 0.53 +2.0
722,556 + CCNA_00665 0.53 -0.6
722,574 - CCNA_00665 0.55 +0.4
722,600 - +2.4
722,618 - CCNA_00665 0.58 -2.2
722,618 - CCNA_00665 0.58 +0.2
722,633 + CCNA_00665 0.60 -0.1
722,659 + CCNA_00665 0.62 -0.3
722,682 + CCNA_00665 0.64 -0.6
722,699 + CCNA_00665 0.65 -1.0
722,738 + CCNA_00665 0.69 -0.3
722,745 - CCNA_00665 0.69 -1.3
722,785 + CCNA_00665 0.73 -0.3
722,791 - CCNA_00665 0.73 -0.9
722,796 + CCNA_00665 0.74 -0.1
722,841 - CCNA_00665 0.78 -0.7
722,841 - CCNA_00665 0.78 +0.4
722,843 + CCNA_00665 0.78 +0.7
722,851 - CCNA_00665 0.79 -0.9
722,851 - CCNA_00665 0.79 +1.4
722,851 - CCNA_00665 0.79 -0.0
722,881 + CCNA_00665 0.81 +0.4
722,903 + CCNA_00665 0.83 -0.3
722,918 + CCNA_00665 0.85 +1.4
722,923 + CCNA_00665 0.85 -0.1
722,923 + CCNA_00665 0.85 -1.0
722,931 - CCNA_00665 0.86 -1.5
722,931 - CCNA_00665 0.86 -0.2
722,936 - CCNA_00665 0.86 -1.6
722,961 + CCNA_00665 0.88 -0.3
722,967 + CCNA_00665 0.89 +0.4
722,967 + CCNA_00665 0.89 -0.9
723,019 + -1.0
723,019 + +0.9
723,025 - -0.2
723,041 - -0.4
723,090 + -0.2
723,090 + -0.1
723,098 - +0.4
723,134 - CCNA_00666 0.12 -0.3
723,144 + CCNA_00666 0.15 -0.5
723,145 + CCNA_00666 0.15 -0.1
723,153 - CCNA_00666 0.18 -0.9
723,153 - CCNA_00666 0.18 -1.8
723,153 - CCNA_00666 0.18 +0.3
723,163 + CCNA_00666 0.20 +2.0
723,163 + CCNA_00666 0.20 +1.0
723,169 - CCNA_00666 0.22 -0.6
723,170 + CCNA_00666 0.22 +1.4
723,173 - CCNA_00666 0.23 -2.3
723,178 - CCNA_00666 0.25 -1.0
723,208 + CCNA_00666 0.33 -0.8
723,208 + CCNA_00666 0.33 +0.6
723,211 - CCNA_00666 0.34 -0.1
723,216 - CCNA_00666 0.35 -0.1
723,235 - CCNA_00666 0.41 +0.6
723,250 + CCNA_00666 0.45 -0.7
723,258 + CCNA_00666 0.47 +1.2
723,258 - CCNA_00666 0.47 +1.0
723,258 - CCNA_00666 0.47 +1.1
723,258 - CCNA_00666 0.47 +1.1
723,293 + CCNA_00666 0.57 +1.0
723,327 - CCNA_00666 0.67 +2.4
723,361 + CCNA_00666 0.76 -1.1
723,369 - CCNA_00666 0.79 -0.3
723,369 - CCNA_00666 0.79 +0.7
723,369 - CCNA_00666 0.79 -1.3
723,369 - CCNA_00666 0.79 -0.4
723,381 - CCNA_00666 0.82 +0.1
723,384 + CCNA_00666 0.83 -0.1
723,411 + -0.7
723,419 - +0.7
723,466 - -0.4
723,476 - -1.4
723,478 + -0.9
723,486 - -1.0
723,486 - +0.4
723,584 + +0.4
723,631 - CCNA_00667 0.11 -2.5
723,635 - CCNA_00667 0.11 -1.2
723,635 - CCNA_00667 0.11 -1.3
723,671 + CCNA_00667 0.14 -1.1
723,691 - CCNA_00667 0.16 -1.9
723,755 - CCNA_00667 0.21 -2.1
723,755 - CCNA_00667 0.21 -2.5
723,768 + CCNA_00667 0.22 +0.4
723,781 - CCNA_00667 0.23 -1.6
723,788 - CCNA_00667 0.24 -0.7
723,788 - CCNA_00667 0.24 -2.2
723,792 + CCNA_00667 0.24 -1.5
723,797 + CCNA_00667 0.25 -2.0
723,797 + CCNA_00667 0.25 -0.4
723,805 - CCNA_00667 0.25 -2.6
723,805 - CCNA_00667 0.25 -3.6
723,805 - CCNA_00667 0.25 -3.1
723,879 - CCNA_00667 0.31 -2.0
723,889 + CCNA_00667 0.32 -0.1
723,897 - CCNA_00667 0.33 -4.0
723,897 - CCNA_00667 0.33 -2.9
723,950 + CCNA_00667 0.37 +1.4
723,950 + CCNA_00667 0.37 +0.1
723,950 + CCNA_00667 0.37 -1.3
723,958 - CCNA_00667 0.38 -0.1
723,958 - CCNA_00667 0.38 -1.8
723,958 - CCNA_00667 0.38 -3.2
723,994 - CCNA_00667 0.41 -3.6
724,016 + CCNA_00667 0.43 -0.9
724,035 + CCNA_00667 0.45 -4.7
724,126 + CCNA_00667 0.52 +0.9
724,134 - CCNA_00667 0.53 -1.6
724,134 - CCNA_00667 0.53 -2.4
724,150 - CCNA_00667 0.54 -3.5
724,202 - CCNA_00667 0.59 -3.7
724,231 + CCNA_00667 0.61 -1.6
724,255 + CCNA_00667 0.63 -1.6
724,255 + +0.4
724,255 + CCNA_00667 0.63 -1.6
724,260 + CCNA_00667 0.64 +0.9
724,268 - CCNA_00667 0.64 -1.9
724,324 - CCNA_00667 0.69 -2.9
724,381 + CCNA_00667 0.74 -0.9
724,386 - CCNA_00667 0.74 -3.9
724,427 - CCNA_00667 0.78 -1.7
724,427 - CCNA_00667 0.78 -0.1
724,432 - CCNA_00667 0.78 -1.3
724,500 - CCNA_00667 0.84 -3.1
724,564 + CCNA_00667 0.89 -1.8
724,582 - +0.3
724,588 - -0.6
724,601 - -3.3
724,626 + +0.1
724,658 - -0.9
724,685 + -0.6
724,697 + -0.3
724,705 - -0.3
724,705 - +0.5
724,710 - +0.9
724,710 - +1.4
724,821 + CCNA_00668 0.11 +0.4
724,834 - CCNA_00668 0.13 -1.6
724,834 - CCNA_00668 0.13 -3.7
724,876 - CCNA_00668 0.17 -2.7
724,876 - CCNA_00668 0.17 -2.9
724,896 + CCNA_00668 0.19 -2.6
724,948 + CCNA_00668 0.23 -1.2
724,948 + CCNA_00668 0.23 -1.0
724,968 + CCNA_00668 0.25 -0.7
724,968 + CCNA_00668 0.25 -2.6
724,969 + CCNA_00668 0.25 +1.4
724,970 + CCNA_00668 0.26 +0.1
724,970 + CCNA_00668 0.26 -2.8
724,976 - CCNA_00668 0.26 -2.3
725,040 - CCNA_00668 0.32 -0.6
725,064 - CCNA_00668 0.34 -3.6
725,224 + CCNA_00668 0.50 -2.1
725,228 + CCNA_00668 0.50 -2.4
725,229 + CCNA_00668 0.50 -2.7
725,232 - CCNA_00668 0.50 -2.0
725,234 + CCNA_00668 0.51 -1.3
725,237 - CCNA_00668 0.51 -3.1
725,259 - CCNA_00668 0.53 -4.0
725,259 - CCNA_00668 0.53 -2.6
725,264 - CCNA_00668 0.53 -3.4
725,350 + CCNA_00668 0.62 -1.4
725,359 + CCNA_00668 0.62 -1.4
725,367 - CCNA_00668 0.63 -1.9
725,377 - CCNA_00668 0.64 -4.2
725,382 + CCNA_00668 0.65 -4.3
725,391 - CCNA_00668 0.66 -2.6
725,415 + CCNA_00668 0.68 -0.7
725,437 + CCNA_00668 0.70 -3.6
725,445 - CCNA_00668 0.71 -4.1
725,458 + CCNA_00668 0.72 -1.6
725,458 + CCNA_00668 0.72 -2.4
725,458 + CCNA_00668 0.72 -1.1
725,458 + CCNA_00668 0.72 -1.6
725,466 - CCNA_00668 0.73 -4.4
725,466 - CCNA_00668 0.73 -4.1
725,466 - CCNA_00668 0.73 -2.7
725,469 + CCNA_00668 0.73 -2.5
725,493 + CCNA_00668 0.75 -1.0
725,527 - +0.4
725,534 - CCNA_00668 0.79 -2.2
725,561 + CCNA_00668 0.82 -1.9
725,561 + CCNA_00668 0.82 -0.4
725,564 - CCNA_00668 0.82 -1.6
725,565 - CCNA_00668 0.82 -2.8
725,565 - CCNA_00668 0.82 -3.3
725,605 + CCNA_00668 0.86 -1.2

Or see this region's nucleotide sequence