Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00445

Experiment: PYE 0.5x 30C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00443 and CCNA_00444 overlap by 1 nucleotidesCCNA_00444 and CCNA_00445 overlap by 1 nucleotidesCCNA_00445 and CCNA_00446 are separated by 3 nucleotidesCCNA_00446 and CCNA_00447 overlap by 4 nucleotidesCCNA_00447 and CCNA_00448 are separated by 3 nucleotides CCNA_00443: CCNA_00443 - chemotaxis protein cheW, at 450,529 to 450,996 _00443 CCNA_00444: CCNA_00444 - chemotaxis protein methyltransferase, at 450,996 to 451,877 _00444 CCNA_00445: CCNA_00445 - receiver domain-glutamate methylesterase cheBI, at 451,877 to 452,911 _00445 CCNA_00446: CCNA_00446 - chemotaxis receiver domain protein cheYII, at 452,915 to 453,304 _00446 CCNA_00447: CCNA_00447 - chemotaxis protein cheD, at 453,301 to 453,864 _00447 CCNA_00448: CCNA_00448 - cheU protein, at 453,868 to 454,251 _00448 Position (kb) 451 452 453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 450.893 kb on + strand, within CCNA_00443at 450.902 kb on + strand, within CCNA_00443at 450.923 kb on + strand, within CCNA_00443at 450.952 kb on - strandat 450.976 kb on - strandat 450.976 kb on - strandat 450.981 kb on + strandat 450.981 kb on + strandat 450.989 kb on - strandat 451.018 kb on + strandat 451.018 kb on + strandat 451.026 kb on - strandat 451.026 kb on - strandat 451.026 kb on - strandat 451.092 kb on - strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.094 kb on + strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.102 kb on - strand, within CCNA_00444at 451.103 kb on - strand, within CCNA_00444at 451.103 kb on - strand, within CCNA_00444at 451.127 kb on + strand, within CCNA_00444at 451.129 kb on - strand, within CCNA_00444at 451.142 kb on + strand, within CCNA_00444at 451.145 kb on - strand, within CCNA_00444at 451.150 kb on - strand, within CCNA_00444at 451.174 kb on + strand, within CCNA_00444at 451.182 kb on - strand, within CCNA_00444at 451.199 kb on + strand, within CCNA_00444at 451.234 kb on - strand, within CCNA_00444at 451.252 kb on - strand, within CCNA_00444at 451.257 kb on + strand, within CCNA_00444at 451.265 kb on - strand, within CCNA_00444at 451.279 kb on - strand, within CCNA_00444at 451.300 kb on + strand, within CCNA_00444at 451.309 kb on - strand, within CCNA_00444at 451.331 kb on - strand, within CCNA_00444at 451.347 kb on + strand, within CCNA_00444at 451.416 kb on + strand, within CCNA_00444at 451.417 kb on + strand, within CCNA_00444at 451.425 kb on + strand, within CCNA_00444at 451.425 kb on - strand, within CCNA_00444at 451.433 kb on - strand, within CCNA_00444at 451.452 kb on + strand, within CCNA_00444at 451.452 kb on + strand, within CCNA_00444at 451.460 kb on - strand, within CCNA_00444at 451.460 kb on - strand, within CCNA_00444at 451.486 kb on + strand, within CCNA_00444at 451.486 kb on + strand, within CCNA_00444at 451.535 kb on + strand, within CCNA_00444at 451.543 kb on - strand, within CCNA_00444at 451.645 kb on + strand, within CCNA_00444at 451.653 kb on - strand, within CCNA_00444at 451.664 kb on + strand, within CCNA_00444at 451.664 kb on + strand, within CCNA_00444at 451.667 kb on - strand, within CCNA_00444at 451.672 kb on - strand, within CCNA_00444at 451.710 kb on + strand, within CCNA_00444at 451.720 kb on + strand, within CCNA_00444at 451.764 kb on - strand, within CCNA_00444at 451.802 kb on + strandat 451.841 kb on - strandat 451.858 kb on + strandat 451.859 kb on + strandat 451.866 kb on - strandat 451.940 kb on + strandat 451.940 kb on + strandat 451.942 kb on + strandat 451.942 kb on + strandat 451.947 kb on + strandat 451.948 kb on - strandat 451.950 kb on - strandat 452.005 kb on - strand, within CCNA_00445at 452.008 kb on + strand, within CCNA_00445at 452.010 kb on - strand, within CCNA_00445at 452.015 kb on + strand, within CCNA_00445at 452.015 kb on + strand, within CCNA_00445at 452.023 kb on - strand, within CCNA_00445at 452.023 kb on - strand, within CCNA_00445at 452.023 kb on - strand, within CCNA_00445at 452.025 kb on - strand, within CCNA_00445at 452.029 kb on + strand, within CCNA_00445at 452.038 kb on - strand, within CCNA_00445at 452.126 kb on + strand, within CCNA_00445at 452.126 kb on + strand, within CCNA_00445at 452.134 kb on - strand, within CCNA_00445at 452.134 kb on - strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.163 kb on + strand, within CCNA_00445at 452.171 kb on - strand, within CCNA_00445at 452.171 kb on - strand, within CCNA_00445at 452.220 kb on + strand, within CCNA_00445at 452.226 kb on + strand, within CCNA_00445at 452.227 kb on - strand, within CCNA_00445at 452.228 kb on - strand, within CCNA_00445at 452.230 kb on + strand, within CCNA_00445at 452.248 kb on + strand, within CCNA_00445at 452.248 kb on + strand, within CCNA_00445at 452.248 kb on + strand, within CCNA_00445at 452.256 kb on - strand, within CCNA_00445at 452.256 kb on - strand, within CCNA_00445at 452.256 kb on - strand, within CCNA_00445at 452.292 kb on - strand, within CCNA_00445at 452.294 kb on + strand, within CCNA_00445at 452.294 kb on + strand, within CCNA_00445at 452.299 kb on + strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.302 kb on - strand, within CCNA_00445at 452.326 kb on + strand, within CCNA_00445at 452.339 kb on + strand, within CCNA_00445at 452.373 kb on + strand, within CCNA_00445at 452.408 kb on + strand, within CCNA_00445at 452.462 kb on - strand, within CCNA_00445at 452.466 kb on + strand, within CCNA_00445at 452.496 kb on + strand, within CCNA_00445at 452.503 kb on + strand, within CCNA_00445at 452.503 kb on + strand, within CCNA_00445at 452.512 kb on - strand, within CCNA_00445at 452.512 kb on - strand, within CCNA_00445at 452.545 kb on + strand, within CCNA_00445at 452.545 kb on + strand, within CCNA_00445at 452.545 kb on + strand, within CCNA_00445at 452.546 kb on + strand, within CCNA_00445at 452.552 kb on - strand, within CCNA_00445at 452.553 kb on - strand, within CCNA_00445at 452.553 kb on - strand, within CCNA_00445at 452.554 kb on - strand, within CCNA_00445at 452.575 kb on + strand, within CCNA_00445at 452.575 kb on + strand, within CCNA_00445at 452.575 kb on + strand, within CCNA_00445at 452.583 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.670 kb on - strand, within CCNA_00445at 452.689 kb on + strand, within CCNA_00445at 452.708 kb on + strand, within CCNA_00445at 452.735 kb on + strand, within CCNA_00445at 452.740 kb on + strand, within CCNA_00445at 452.763 kb on - strand, within CCNA_00445at 452.769 kb on - strand, within CCNA_00445at 452.787 kb on - strand, within CCNA_00445at 452.793 kb on - strand, within CCNA_00445at 452.815 kb on + strandat 452.826 kb on + strandat 452.862 kb on - strandat 452.862 kb on - strandat 452.888 kb on + strandat 452.913 kb on - strandat 452.917 kb on + strandat 452.945 kb on - strandat 452.967 kb on - strand, within CCNA_00446at 453.013 kb on + strand, within CCNA_00446at 453.013 kb on + strand, within CCNA_00446at 453.023 kb on - strand, within CCNA_00446at 453.044 kb on + strand, within CCNA_00446at 453.052 kb on - strand, within CCNA_00446at 453.058 kb on + strand, within CCNA_00446at 453.060 kb on - strand, within CCNA_00446at 453.111 kb on + strand, within CCNA_00446at 453.116 kb on + strand, within CCNA_00446at 453.151 kb on + strand, within CCNA_00446at 453.195 kb on + strand, within CCNA_00446at 453.212 kb on + strand, within CCNA_00446at 453.212 kb on + strand, within CCNA_00446at 453.220 kb on - strand, within CCNA_00446at 453.232 kb on + strand, within CCNA_00446at 453.237 kb on + strand, within CCNA_00446at 453.244 kb on + strand, within CCNA_00446at 453.245 kb on - strand, within CCNA_00446at 453.247 kb on - strand, within CCNA_00446at 453.252 kb on - strand, within CCNA_00446at 453.252 kb on - strand, within CCNA_00446at 453.254 kb on + strand, within CCNA_00446at 453.262 kb on - strand, within CCNA_00446at 453.293 kb on - strandat 453.295 kb on + strandat 453.306 kb on - strandat 453.311 kb on - strandat 453.337 kb on + strandat 453.337 kb on + strandat 453.337 kb on + strandat 453.337 kb on + strandat 453.343 kb on + strandat 453.357 kb on + strandat 453.399 kb on - strand, within CCNA_00447at 453.413 kb on - strand, within CCNA_00447at 453.439 kb on + strand, within CCNA_00447at 453.439 kb on + strand, within CCNA_00447at 453.439 kb on + strand, within CCNA_00447at 453.463 kb on + strand, within CCNA_00447at 453.512 kb on - strand, within CCNA_00447at 453.516 kb on + strand, within CCNA_00447at 453.591 kb on + strand, within CCNA_00447at 453.592 kb on + strand, within CCNA_00447at 453.608 kb on + strand, within CCNA_00447at 453.618 kb on - strand, within CCNA_00447at 453.630 kb on + strand, within CCNA_00447at 453.637 kb on + strand, within CCNA_00447at 453.679 kb on + strand, within CCNA_00447at 453.702 kb on + strand, within CCNA_00447at 453.709 kb on - strand, within CCNA_00447at 453.719 kb on + strand, within CCNA_00447at 453.738 kb on + strand, within CCNA_00447at 453.738 kb on + strand, within CCNA_00447at 453.807 kb on + strand, within CCNA_00447at 453.809 kb on - strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.858 kb on + strandat 453.864 kb on + strandat 453.866 kb on - strandat 453.866 kb on - strandat 453.866 kb on - strandat 453.866 kb on - strandat 453.883 kb on + strandat 453.907 kb on + strand, within CCNA_00448

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep3 12 days
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450,893 + CCNA_00443 0.78 +1.0
450,902 + CCNA_00443 0.80 +0.7
450,923 + CCNA_00443 0.84 +1.1
450,952 - -1.6
450,976 - +2.3
450,976 - +0.3
450,981 + +0.7
450,981 + +1.2
450,989 - +0.3
451,018 + +1.5
451,018 + +1.0
451,026 - -0.3
451,026 - -1.1
451,026 - +0.1
451,092 - CCNA_00444 0.11 -1.9
451,094 + CCNA_00444 0.11 +1.2
451,094 + CCNA_00444 0.11 +0.5
451,094 + CCNA_00444 0.11 +0.9
451,094 + CCNA_00444 0.11 +1.3
451,094 + CCNA_00444 0.11 +0.9
451,102 - CCNA_00444 0.12 -1.4
451,102 - CCNA_00444 0.12 +0.3
451,102 - CCNA_00444 0.12 -0.9
451,102 - CCNA_00444 0.12 +1.0
451,103 - CCNA_00444 0.12 +1.1
451,103 - CCNA_00444 0.12 -0.9
451,127 + CCNA_00444 0.15 +1.2
451,129 - CCNA_00444 0.15 -1.3
451,142 + CCNA_00444 0.17 +0.5
451,145 - CCNA_00444 0.17 -0.5
451,150 - CCNA_00444 0.17 -1.0
451,174 + CCNA_00444 0.20 +1.3
451,182 - CCNA_00444 0.21 +0.3
451,199 + CCNA_00444 0.23 +1.0
451,234 - CCNA_00444 0.27 +1.0
451,252 - CCNA_00444 0.29 -0.3
451,257 + CCNA_00444 0.30 +0.8
451,265 - CCNA_00444 0.30 -0.6
451,279 - CCNA_00444 0.32 +1.3
451,300 + CCNA_00444 0.34 +1.1
451,309 - CCNA_00444 0.35 +1.3
451,331 - CCNA_00444 0.38 +1.3
451,347 + CCNA_00444 0.40 +0.6
451,416 + CCNA_00444 0.48 +1.2
451,417 + CCNA_00444 0.48 +1.1
451,425 + CCNA_00444 0.49 +1.2
451,425 - CCNA_00444 0.49 +2.3
451,433 - CCNA_00444 0.50 +1.3
451,452 + CCNA_00444 0.52 +1.3
451,452 + CCNA_00444 0.52 +1.1
451,460 - CCNA_00444 0.53 -0.3
451,460 - CCNA_00444 0.53 -0.8
451,486 + CCNA_00444 0.56 +0.8
451,486 + CCNA_00444 0.56 +1.2
451,535 + CCNA_00444 0.61 +0.8
451,543 - CCNA_00444 0.62 +1.1
451,645 + CCNA_00444 0.74 +3.3
451,653 - CCNA_00444 0.74 -1.0
451,664 + CCNA_00444 0.76 +1.0
451,664 + CCNA_00444 0.76 +1.0
451,667 - CCNA_00444 0.76 +0.3
451,672 - CCNA_00444 0.77 +1.3
451,710 + CCNA_00444 0.81 +1.3
451,720 + CCNA_00444 0.82 +1.1
451,764 - CCNA_00444 0.87 -0.0
451,802 + +1.3
451,841 - +0.7
451,858 + +1.0
451,859 + +1.1
451,866 - +0.3
451,940 + +0.8
451,940 + +0.8
451,942 + +0.6
451,942 + +1.0
451,947 + +1.1
451,948 - +2.1
451,950 - -0.5
452,005 - CCNA_00445 0.12 +0.5
452,008 + CCNA_00445 0.13 +0.6
452,010 - CCNA_00445 0.13 +2.3
452,015 + CCNA_00445 0.13 +0.5
452,015 + CCNA_00445 0.13 +0.9
452,023 - CCNA_00445 0.14 +0.7
452,023 - CCNA_00445 0.14 +0.7
452,023 - CCNA_00445 0.14 -0.0
452,025 - CCNA_00445 0.14 +0.6
452,029 + CCNA_00445 0.15 +1.2
452,038 - CCNA_00445 0.16 +1.3
452,126 + CCNA_00445 0.24 +1.1
452,126 + CCNA_00445 0.24 +1.1
452,134 - CCNA_00445 0.25 -0.0
452,134 - CCNA_00445 0.25 -0.5
452,163 + CCNA_00445 0.28 +1.6
452,163 + CCNA_00445 0.28 +1.2
452,163 + CCNA_00445 0.28 +1.1
452,163 + CCNA_00445 0.28 -1.0
452,163 + CCNA_00445 0.28 +1.1
452,163 + CCNA_00445 0.28 +1.1
452,163 + CCNA_00445 0.28 +1.0
452,171 - CCNA_00445 0.28 -0.1
452,171 - CCNA_00445 0.28 +0.1
452,220 + CCNA_00445 0.33 +1.3
452,226 + CCNA_00445 0.34 +1.1
452,227 - CCNA_00445 0.34 -2.5
452,228 - CCNA_00445 0.34 -2.6
452,230 + CCNA_00445 0.34 +1.3
452,248 + CCNA_00445 0.36 +2.1
452,248 + CCNA_00445 0.36 +1.2
452,248 + CCNA_00445 0.36 +0.7
452,256 - CCNA_00445 0.37 -2.1
452,256 - CCNA_00445 0.37 -0.2
452,256 - CCNA_00445 0.37 -0.6
452,292 - CCNA_00445 0.40 +0.2
452,294 + CCNA_00445 0.40 +1.6
452,294 + CCNA_00445 0.40 +1.0
452,299 + CCNA_00445 0.41 +1.1
452,302 - CCNA_00445 0.41 -0.6
452,302 - CCNA_00445 0.41 -0.9
452,302 - CCNA_00445 0.41 -0.0
452,302 - CCNA_00445 0.41 -1.9
452,326 + CCNA_00445 0.43 +1.3
452,339 + CCNA_00445 0.45 +1.0
452,373 + CCNA_00445 0.48 +1.1
452,408 + CCNA_00445 0.51 +1.2
452,462 - CCNA_00445 0.57 +0.1
452,466 + CCNA_00445 0.57 +1.0
452,496 + CCNA_00445 0.60 +1.1
452,503 + CCNA_00445 0.60 +1.1
452,503 + CCNA_00445 0.60 +1.0
452,512 - CCNA_00445 0.61 +0.9
452,512 - CCNA_00445 0.61 -0.3
452,545 + CCNA_00445 0.65 +0.9
452,545 + CCNA_00445 0.65 +0.9
452,545 + CCNA_00445 0.65 +1.0
452,546 + CCNA_00445 0.65 +0.6
452,552 - CCNA_00445 0.65 -1.1
452,553 - CCNA_00445 0.65 -0.3
452,553 - CCNA_00445 0.65 -0.5
452,554 - CCNA_00445 0.65 -0.7
452,575 + CCNA_00445 0.67 +1.0
452,575 + CCNA_00445 0.67 +0.4
452,575 + CCNA_00445 0.67 +0.6
452,583 - CCNA_00445 0.68 -2.9
452,670 - CCNA_00445 0.77 +0.1
452,670 - CCNA_00445 0.77 -0.3
452,670 - CCNA_00445 0.77 -1.1
452,670 - CCNA_00445 0.77 +1.6
452,670 - CCNA_00445 0.77 -2.0
452,689 + CCNA_00445 0.78 +0.9
452,708 + CCNA_00445 0.80 +0.8
452,735 + CCNA_00445 0.83 +1.2
452,740 + CCNA_00445 0.83 +1.2
452,763 - CCNA_00445 0.86 -0.3
452,769 - CCNA_00445 0.86 +1.8
452,787 - CCNA_00445 0.88 -1.1
452,793 - CCNA_00445 0.89 -0.8
452,815 + +0.6
452,826 + +1.2
452,862 - +1.1
452,862 - -0.0
452,888 + +1.1
452,913 - -0.5
452,917 + +2.3
452,945 - -0.3
452,967 - CCNA_00446 0.13 -0.0
453,013 + CCNA_00446 0.25 +1.5
453,013 + CCNA_00446 0.25 +0.7
453,023 - CCNA_00446 0.28 +0.5
453,044 + CCNA_00446 0.33 +1.5
453,052 - CCNA_00446 0.35 -0.9
453,058 + CCNA_00446 0.37 +1.3
453,060 - CCNA_00446 0.37 -0.6
453,111 + CCNA_00446 0.50 +1.0
453,116 + CCNA_00446 0.52 +1.0
453,151 + CCNA_00446 0.61 +1.4
453,195 + CCNA_00446 0.72 +1.7
453,212 + CCNA_00446 0.76 +1.4
453,212 + CCNA_00446 0.76 +1.3
453,220 - CCNA_00446 0.78 -0.9
453,232 + CCNA_00446 0.81 +1.4
453,237 + CCNA_00446 0.83 +1.2
453,244 + CCNA_00446 0.84 +0.8
453,245 - CCNA_00446 0.85 -0.4
453,247 - CCNA_00446 0.85 -0.4
453,252 - CCNA_00446 0.86 +0.4
453,252 - CCNA_00446 0.86 +0.4
453,254 + CCNA_00446 0.87 +1.6
453,262 - CCNA_00446 0.89 -1.9
453,293 - +0.5
453,295 + +1.6
453,306 - -0.6
453,311 - +0.6
453,337 + +1.3
453,337 + +0.9
453,337 + +0.9
453,337 + +1.2
453,343 + +1.3
453,357 + +1.2
453,399 - CCNA_00447 0.17 -0.9
453,413 - CCNA_00447 0.20 +0.9
453,439 + CCNA_00447 0.24 +1.1
453,439 + CCNA_00447 0.24 +1.2
453,439 + CCNA_00447 0.24 +1.3
453,463 + CCNA_00447 0.29 +1.1
453,512 - CCNA_00447 0.37 +1.6
453,516 + CCNA_00447 0.38 +1.3
453,591 + CCNA_00447 0.51 +0.9
453,592 + CCNA_00447 0.52 +1.4
453,608 + CCNA_00447 0.54 +1.0
453,618 - CCNA_00447 0.56 -0.4
453,630 + CCNA_00447 0.58 +1.4
453,637 + CCNA_00447 0.60 +1.1
453,679 + CCNA_00447 0.67 +1.4
453,702 + CCNA_00447 0.71 +1.3
453,709 - CCNA_00447 0.72 +0.5
453,719 + CCNA_00447 0.74 +0.8
453,738 + CCNA_00447 0.77 +1.2
453,738 + CCNA_00447 0.77 +1.0
453,807 + CCNA_00447 0.90 +1.0
453,809 - -1.5
453,858 + +1.0
453,858 + +0.8
453,858 + +0.7
453,858 + -0.1
453,858 + +1.5
453,858 + +0.6
453,858 + +1.2
453,858 + +0.9
453,858 + +0.9
453,864 + +1.0
453,866 - -1.1
453,866 - -0.0
453,866 - -1.4
453,866 - -0.7
453,883 + +1.2
453,907 + CCNA_00448 0.10 +1.2

Or see this region's nucleotide sequence