Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00273

Experiment: PYE 0.5x 30C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00272 and CCNA_00273 are separated by 8 nucleotidesCCNA_00273 and CCNA_00274 are separated by 340 nucleotidesCCNA_00274 and CCNA_00275 are separated by 83 nucleotides CCNA_00272: CCNA_00272 - RmuC family protein, at 285,476 to 286,765 _00272 CCNA_00273: CCNA_00273 - peptide deformylase, at 286,774 to 287,295 _00273 CCNA_00274: CCNA_00274 - hypothetical protein, at 287,636 to 287,998 _00274 CCNA_00275: CCNA_00275 - transposase, DDE family, at 288,082 to 289,527 _00275 Position (kb) 286 287 288Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 285.783 kb on - strand, within CCNA_00272at 285.783 kb on - strand, within CCNA_00272at 285.787 kb on + strand, within CCNA_00272at 285.787 kb on + strand, within CCNA_00272at 285.795 kb on - strand, within CCNA_00272at 285.795 kb on - strand, within CCNA_00272at 285.795 kb on - strand, within CCNA_00272at 285.795 kb on - strand, within CCNA_00272at 285.811 kb on + strand, within CCNA_00272at 285.829 kb on + strand, within CCNA_00272at 285.837 kb on - strand, within CCNA_00272at 285.847 kb on + strand, within CCNA_00272at 285.855 kb on - strand, within CCNA_00272at 285.883 kb on + strand, within CCNA_00272at 285.893 kb on + strand, within CCNA_00272at 285.935 kb on - strand, within CCNA_00272at 286.029 kb on - strand, within CCNA_00272at 286.048 kb on + strand, within CCNA_00272at 286.048 kb on + strand, within CCNA_00272at 286.048 kb on + strand, within CCNA_00272at 286.100 kb on - strand, within CCNA_00272at 286.181 kb on + strand, within CCNA_00272at 286.210 kb on + strand, within CCNA_00272at 286.214 kb on - strand, within CCNA_00272at 286.227 kb on + strand, within CCNA_00272at 286.239 kb on - strand, within CCNA_00272at 286.252 kb on + strandat 286.257 kb on + strand, within CCNA_00272at 286.342 kb on - strand, within CCNA_00272at 286.342 kb on - strand, within CCNA_00272at 286.375 kb on - strand, within CCNA_00272at 286.375 kb on - strand, within CCNA_00272at 286.393 kb on - strand, within CCNA_00272at 286.417 kb on + strand, within CCNA_00272at 286.417 kb on + strand, within CCNA_00272at 286.417 kb on + strand, within CCNA_00272at 286.417 kb on + strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.425 kb on - strand, within CCNA_00272at 286.488 kb on + strand, within CCNA_00272at 286.488 kb on + strand, within CCNA_00272at 286.496 kb on - strand, within CCNA_00272at 286.528 kb on + strand, within CCNA_00272at 286.536 kb on - strand, within CCNA_00272at 286.547 kb on + strand, within CCNA_00272at 286.547 kb on + strand, within CCNA_00272at 286.547 kb on + strand, within CCNA_00272at 286.552 kb on + strand, within CCNA_00272at 286.555 kb on - strand, within CCNA_00272at 286.555 kb on - strand, within CCNA_00272at 286.555 kb on - strand, within CCNA_00272at 286.560 kb on - strand, within CCNA_00272at 286.560 kb on - strand, within CCNA_00272at 286.569 kb on + strand, within CCNA_00272at 286.569 kb on + strand, within CCNA_00272at 286.569 kb on + strand, within CCNA_00272at 286.599 kb on + strand, within CCNA_00272at 286.603 kb on + strand, within CCNA_00272at 286.618 kb on - strand, within CCNA_00272at 286.633 kb on + strand, within CCNA_00272at 286.641 kb on - strandat 286.705 kb on - strandat 286.706 kb on + strandat 286.716 kb on + strandat 286.734 kb on + strandat 286.770 kb on + strandat 286.778 kb on - strandat 287.268 kb on + strandat 287.290 kb on + strandat 287.290 kb on + strandat 287.290 kb on + strandat 287.290 kb on + strandat 287.290 kb on + strandat 287.290 kb on + strandat 287.290 kb on + strandat 287.298 kb on - strandat 287.298 kb on - strandat 287.299 kb on - strandat 287.355 kb on + strandat 287.363 kb on - strandat 287.381 kb on + strandat 287.381 kb on + strandat 287.389 kb on - strandat 287.416 kb on - strandat 287.441 kb on - strandat 287.474 kb on - strandat 287.516 kb on + strandat 287.526 kb on + strandat 287.526 kb on + strandat 287.531 kb on + strandat 287.531 kb on + strandat 287.536 kb on + strandat 287.536 kb on + strandat 287.536 kb on + strandat 287.536 kb on + strandat 287.536 kb on + strandat 287.539 kb on - strandat 287.544 kb on - strandat 287.544 kb on - strandat 287.544 kb on - strandat 287.544 kb on - strandat 287.544 kb on - strandat 287.544 kb on - strandat 287.544 kb on - strandat 287.586 kb on - strandat 287.631 kb on + strandat 287.631 kb on + strandat 287.666 kb on + strandat 287.691 kb on - strand, within CCNA_00274at 287.738 kb on + strand, within CCNA_00274at 287.748 kb on + strand, within CCNA_00274at 287.791 kb on + strand, within CCNA_00274at 287.808 kb on - strand, within CCNA_00274at 287.882 kb on + strand, within CCNA_00274at 287.902 kb on + strand, within CCNA_00274at 287.910 kb on - strand, within CCNA_00274at 287.987 kb on + strandat 287.987 kb on + strandat 287.990 kb on - strandat 288.007 kb on - strandat 288.017 kb on - strandat 288.027 kb on - strandat 288.027 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep3 12 days
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285,783 - CCNA_00272 0.24 -0.2
285,783 - CCNA_00272 0.24 -0.7
285,787 + CCNA_00272 0.24 +0.1
285,787 + CCNA_00272 0.24 +0.9
285,795 - CCNA_00272 0.25 +2.2
285,795 - CCNA_00272 0.25 +0.1
285,795 - CCNA_00272 0.25 -1.5
285,795 - CCNA_00272 0.25 -0.7
285,811 + CCNA_00272 0.26 -3.3
285,829 + CCNA_00272 0.27 +1.0
285,837 - CCNA_00272 0.28 -1.6
285,847 + CCNA_00272 0.29 -0.1
285,855 - CCNA_00272 0.29 -0.9
285,883 + CCNA_00272 0.32 +0.2
285,893 + CCNA_00272 0.32 +0.4
285,935 - CCNA_00272 0.36 -0.2
286,029 - CCNA_00272 0.43 -2.1
286,048 + CCNA_00272 0.44 +0.3
286,048 + CCNA_00272 0.44 +0.4
286,048 + CCNA_00272 0.44 +0.1
286,100 - CCNA_00272 0.48 -1.2
286,181 + CCNA_00272 0.55 -1.3
286,210 + CCNA_00272 0.57 -1.0
286,214 - CCNA_00272 0.57 -0.6
286,227 + CCNA_00272 0.58 -0.3
286,239 - CCNA_00272 0.59 -1.4
286,252 + +1.4
286,257 + CCNA_00272 0.61 -0.6
286,342 - CCNA_00272 0.67 +0.2
286,342 - CCNA_00272 0.67 -1.0
286,375 - CCNA_00272 0.70 -0.3
286,375 - CCNA_00272 0.70 +0.9
286,393 - CCNA_00272 0.71 -0.5
286,417 + CCNA_00272 0.73 -2.1
286,417 + CCNA_00272 0.73 +0.1
286,417 + CCNA_00272 0.73 -0.3
286,417 + CCNA_00272 0.73 -0.0
286,425 - CCNA_00272 0.74 +0.0
286,425 - CCNA_00272 0.74 -0.3
286,425 - CCNA_00272 0.74 -1.4
286,425 - CCNA_00272 0.74 +0.2
286,425 - CCNA_00272 0.74 -0.5
286,425 - CCNA_00272 0.74 -1.1
286,425 - CCNA_00272 0.74 +2.2
286,425 - CCNA_00272 0.74 -0.6
286,425 - CCNA_00272 0.74 -2.1
286,425 - CCNA_00272 0.74 -0.8
286,488 + CCNA_00272 0.78 -2.7
286,488 + CCNA_00272 0.78 +0.1
286,496 - CCNA_00272 0.79 +0.2
286,528 + CCNA_00272 0.82 +0.0
286,536 - CCNA_00272 0.82 -1.0
286,547 + CCNA_00272 0.83 -0.9
286,547 + CCNA_00272 0.83 +0.2
286,547 + CCNA_00272 0.83 +1.0
286,552 + CCNA_00272 0.83 -0.3
286,555 - CCNA_00272 0.84 +1.2
286,555 - CCNA_00272 0.84 -0.4
286,555 - CCNA_00272 0.84 -1.0
286,560 - CCNA_00272 0.84 -0.5
286,560 - CCNA_00272 0.84 -1.8
286,569 + CCNA_00272 0.85 +0.5
286,569 + CCNA_00272 0.85 +0.2
286,569 + CCNA_00272 0.85 -1.4
286,599 + CCNA_00272 0.87 -0.6
286,603 + CCNA_00272 0.87 +0.1
286,618 - CCNA_00272 0.89 +0.4
286,633 + CCNA_00272 0.90 -0.1
286,641 - -0.1
286,705 - +0.8
286,706 + +0.6
286,716 + +1.6
286,734 + -0.6
286,770 + +0.5
286,778 - -0.3
287,268 + -0.1
287,290 + +0.7
287,290 + +0.8
287,290 + +0.6
287,290 + +0.9
287,290 + +0.2
287,290 + +0.6
287,290 + +0.8
287,298 - +0.9
287,298 - +0.2
287,299 - -0.4
287,355 + +0.7
287,363 - +1.2
287,381 + +0.5
287,381 + +0.3
287,389 - -0.0
287,416 - +0.3
287,441 - +0.8
287,474 - -0.2
287,516 + -1.0
287,526 + -1.4
287,526 + -0.5
287,531 + -0.3
287,531 + -0.8
287,536 + +0.6
287,536 + -2.6
287,536 + -0.4
287,536 + -0.6
287,536 + -1.3
287,539 - +0.3
287,544 - +0.6
287,544 - -0.0
287,544 - +0.9
287,544 - +0.6
287,544 - -0.3
287,544 - +0.4
287,544 - -0.5
287,586 - -1.3
287,631 + -0.7
287,631 + -1.1
287,666 + -1.8
287,691 - CCNA_00274 0.15 -0.6
287,738 + CCNA_00274 0.28 +0.6
287,748 + CCNA_00274 0.31 +0.3
287,791 + CCNA_00274 0.43 +2.2
287,808 - CCNA_00274 0.47 -0.6
287,882 + CCNA_00274 0.68 -2.4
287,902 + CCNA_00274 0.73 -1.3
287,910 - CCNA_00274 0.75 -0.4
287,987 + +0.2
287,987 + -0.5
287,990 - -1.1
288,007 - -0.8
288,017 - +0.0
288,027 - -0.6
288,027 - -1.1

Or see this region's nucleotide sequence