Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00208

Experiment: PYE 0.5x 30C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00206 and CCNA_00207 overlap by 1 nucleotidesCCNA_00207 and CCNA_00208 are separated by 0 nucleotidesCCNA_00208 and CCNA_00209 are separated by 80 nucleotides CCNA_00206: CCNA_00206 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A, at 220,931 to 221,641 _00206 CCNA_00207: CCNA_00207 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 221,641 to 222,282 _00207 CCNA_00208: CCNA_00208 - type 1 glutamine amidotransferase (GATase1)-like domain protein, at 222,283 to 223,272 _00208 CCNA_00209: CCNA_00209 - undecaprenyl-phosphomannose:protein mannosyltransferase, at 223,353 to 224,927 _00209 Position (kb) 222 223 224Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 221.300 kb on + strand, within CCNA_00206at 221.327 kb on + strand, within CCNA_00206at 221.331 kb on - strand, within CCNA_00206at 221.353 kb on + strand, within CCNA_00206at 221.387 kb on - strand, within CCNA_00206at 221.409 kb on - strand, within CCNA_00206at 221.436 kb on + strand, within CCNA_00206at 221.480 kb on + strand, within CCNA_00206at 221.558 kb on - strand, within CCNA_00206at 221.575 kb on + strandat 221.575 kb on + strandat 221.575 kb on + strandat 221.644 kb on + strandat 221.683 kb on - strandat 221.750 kb on - strand, within CCNA_00207at 221.754 kb on + strand, within CCNA_00207at 221.755 kb on - strand, within CCNA_00207at 221.841 kb on - strand, within CCNA_00207at 221.871 kb on + strandat 221.903 kb on + strand, within CCNA_00207at 221.913 kb on + strand, within CCNA_00207at 221.913 kb on + strand, within CCNA_00207at 221.966 kb on - strand, within CCNA_00207at 222.006 kb on + strand, within CCNA_00207at 222.012 kb on + strand, within CCNA_00207at 222.018 kb on + strand, within CCNA_00207at 222.021 kb on - strand, within CCNA_00207at 222.033 kb on - strand, within CCNA_00207at 222.065 kb on + strand, within CCNA_00207at 222.065 kb on + strand, within CCNA_00207at 222.070 kb on + strand, within CCNA_00207at 222.113 kb on + strand, within CCNA_00207at 222.142 kb on + strand, within CCNA_00207at 222.161 kb on + strand, within CCNA_00207at 222.207 kb on + strand, within CCNA_00207at 222.238 kb on - strandat 222.240 kb on + strandat 222.246 kb on + strandat 222.246 kb on + strandat 222.246 kb on + strandat 222.246 kb on + strandat 222.248 kb on - strandat 222.248 kb on - strandat 222.262 kb on + strandat 222.281 kb on + strandat 222.288 kb on + strandat 222.288 kb on + strandat 222.293 kb on + strandat 222.296 kb on + strandat 222.296 kb on - strandat 222.306 kb on + strandat 222.314 kb on - strandat 222.314 kb on - strandat 222.318 kb on + strandat 222.343 kb on + strandat 222.411 kb on - strand, within CCNA_00208at 222.411 kb on - strand, within CCNA_00208at 222.413 kb on + strand, within CCNA_00208at 222.483 kb on + strand, within CCNA_00208at 222.537 kb on - strand, within CCNA_00208at 222.537 kb on - strand, within CCNA_00208at 222.573 kb on + strand, within CCNA_00208at 222.641 kb on + strandat 222.654 kb on - strand, within CCNA_00208at 222.666 kb on + strand, within CCNA_00208at 222.673 kb on + strand, within CCNA_00208at 222.701 kb on + strand, within CCNA_00208at 222.715 kb on - strand, within CCNA_00208at 222.737 kb on - strand, within CCNA_00208at 222.739 kb on + strand, within CCNA_00208at 222.753 kb on - strand, within CCNA_00208at 222.759 kb on + strand, within CCNA_00208at 222.769 kb on + strand, within CCNA_00208at 222.769 kb on + strand, within CCNA_00208at 222.774 kb on + strand, within CCNA_00208at 222.782 kb on - strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.791 kb on + strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.799 kb on - strand, within CCNA_00208at 222.843 kb on - strand, within CCNA_00208at 222.844 kb on + strand, within CCNA_00208at 222.844 kb on + strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.852 kb on - strand, within CCNA_00208at 222.856 kb on + strand, within CCNA_00208at 222.857 kb on - strand, within CCNA_00208at 222.893 kb on + strand, within CCNA_00208at 222.893 kb on + strand, within CCNA_00208at 222.896 kb on - strand, within CCNA_00208at 222.896 kb on - strand, within CCNA_00208at 222.898 kb on + strand, within CCNA_00208at 222.901 kb on - strand, within CCNA_00208at 222.901 kb on - strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.922 kb on + strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.930 kb on - strand, within CCNA_00208at 222.956 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.981 kb on + strand, within CCNA_00208at 222.989 kb on - strand, within CCNA_00208at 222.989 kb on - strand, within CCNA_00208at 222.989 kb on - strand, within CCNA_00208at 223.003 kb on + strand, within CCNA_00208at 223.011 kb on - strand, within CCNA_00208at 223.025 kb on - strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.030 kb on + strand, within CCNA_00208at 223.035 kb on + strand, within CCNA_00208at 223.035 kb on + strand, within CCNA_00208at 223.038 kb on - strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.061 kb on + strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.069 kb on - strand, within CCNA_00208at 223.089 kb on - strand, within CCNA_00208at 223.127 kb on + strand, within CCNA_00208at 223.135 kb on - strand, within CCNA_00208at 223.164 kb on + strand, within CCNA_00208at 223.172 kb on - strand, within CCNA_00208at 223.201 kb on - strandat 223.206 kb on - strandat 223.207 kb on - strandat 223.251 kb on + strandat 223.270 kb on + strandat 223.300 kb on - strandat 223.311 kb on - strandat 223.353 kb on - strandat 223.366 kb on + strandat 223.366 kb on + strandat 223.366 kb on + strandat 223.366 kb on + strandat 223.366 kb on + strandat 223.374 kb on - strandat 223.434 kb on - strandat 223.434 kb on - strandat 223.434 kb on - strandat 223.456 kb on + strandat 223.469 kb on - strandat 223.498 kb on + strandat 223.498 kb on + strandat 223.506 kb on - strandat 223.551 kb on - strand, within CCNA_00209at 223.602 kb on + strand, within CCNA_00209at 223.609 kb on - strand, within CCNA_00209at 223.619 kb on + strand, within CCNA_00209at 223.635 kb on - strand, within CCNA_00209at 223.655 kb on + strand, within CCNA_00209at 223.689 kb on + strand, within CCNA_00209at 223.722 kb on + strand, within CCNA_00209at 223.729 kb on + strand, within CCNA_00209at 223.743 kb on - strand, within CCNA_00209at 223.761 kb on + strand, within CCNA_00209at 223.802 kb on + strand, within CCNA_00209at 223.838 kb on + strand, within CCNA_00209at 223.838 kb on + strand, within CCNA_00209at 223.838 kb on + strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.846 kb on - strand, within CCNA_00209at 223.851 kb on - strand, within CCNA_00209at 223.962 kb on + strand, within CCNA_00209at 223.987 kb on + strand, within CCNA_00209at 223.995 kb on - strand, within CCNA_00209at 224.041 kb on + strand, within CCNA_00209at 224.052 kb on - strand, within CCNA_00209at 224.060 kb on + strand, within CCNA_00209at 224.136 kb on + strand, within CCNA_00209at 224.141 kb on - strand, within CCNA_00209at 224.141 kb on - strand, within CCNA_00209at 224.187 kb on - strand, within CCNA_00209at 224.197 kb on - strand, within CCNA_00209at 224.223 kb on + strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209at 224.231 kb on - strand, within CCNA_00209

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep3 12 days
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221,300 + CCNA_00206 0.52 -2.2
221,327 + CCNA_00206 0.56 -2.8
221,331 - CCNA_00206 0.56 -1.8
221,353 + CCNA_00206 0.59 -1.8
221,387 - CCNA_00206 0.64 +0.7
221,409 - CCNA_00206 0.67 +2.2
221,436 + CCNA_00206 0.71 -1.2
221,480 + CCNA_00206 0.77 -1.6
221,558 - CCNA_00206 0.88 +1.2
221,575 + -1.7
221,575 + +0.1
221,575 + -3.4
221,644 + -4.0
221,683 - +0.2
221,750 - CCNA_00207 0.17 -0.3
221,754 + CCNA_00207 0.18 -2.2
221,755 - CCNA_00207 0.18 +0.7
221,841 - CCNA_00207 0.31 +1.2
221,871 + -0.3
221,903 + CCNA_00207 0.41 -2.4
221,913 + CCNA_00207 0.42 -3.0
221,913 + CCNA_00207 0.42 -3.4
221,966 - CCNA_00207 0.51 +0.7
222,006 + CCNA_00207 0.57 -3.3
222,012 + CCNA_00207 0.58 -3.6
222,018 + CCNA_00207 0.59 -2.6
222,021 - CCNA_00207 0.59 +0.2
222,033 - CCNA_00207 0.61 +0.7
222,065 + CCNA_00207 0.66 -3.3
222,065 + CCNA_00207 0.66 -4.1
222,070 + CCNA_00207 0.67 -1.8
222,113 + CCNA_00207 0.74 -2.5
222,142 + CCNA_00207 0.78 -2.4
222,161 + CCNA_00207 0.81 -2.7
222,207 + CCNA_00207 0.88 -4.2
222,238 - -1.9
222,240 + -4.2
222,246 + -3.0
222,246 + -1.7
222,246 + -1.9
222,246 + -1.6
222,248 - +1.2
222,248 - -0.1
222,262 + -1.0
222,281 + +0.9
222,288 + +0.3
222,288 + +0.2
222,293 + +0.1
222,296 + +1.1
222,296 - +1.2
222,306 + +0.3
222,314 - +0.5
222,314 - -0.3
222,318 + +1.0
222,343 + +1.0
222,411 - CCNA_00208 0.13 -1.9
222,411 - CCNA_00208 0.13 +0.1
222,413 + CCNA_00208 0.13 +0.0
222,483 + CCNA_00208 0.20 +0.3
222,537 - CCNA_00208 0.26 -0.3
222,537 - CCNA_00208 0.26 -1.1
222,573 + CCNA_00208 0.29 +0.4
222,641 + +1.2
222,654 - CCNA_00208 0.37 -1.3
222,666 + CCNA_00208 0.39 -0.5
222,673 + CCNA_00208 0.39 -1.9
222,701 + CCNA_00208 0.42 -1.5
222,715 - CCNA_00208 0.44 -1.2
222,737 - CCNA_00208 0.46 -1.8
222,739 + CCNA_00208 0.46 -0.9
222,753 - CCNA_00208 0.47 -0.1
222,759 + CCNA_00208 0.48 -0.5
222,769 + CCNA_00208 0.49 -0.7
222,769 + CCNA_00208 0.49 -1.5
222,774 + CCNA_00208 0.50 -1.2
222,782 - CCNA_00208 0.50 +0.7
222,791 + CCNA_00208 0.51 -0.0
222,791 + CCNA_00208 0.51 +0.9
222,791 + CCNA_00208 0.51 +2.2
222,791 + CCNA_00208 0.51 -0.1
222,791 + CCNA_00208 0.51 -0.8
222,799 - CCNA_00208 0.52 -0.7
222,799 - CCNA_00208 0.52 -1.9
222,799 - CCNA_00208 0.52 -0.9
222,843 - CCNA_00208 0.57 -1.8
222,844 + CCNA_00208 0.57 +0.2
222,844 + CCNA_00208 0.57 +0.0
222,852 - CCNA_00208 0.57 -0.4
222,852 - CCNA_00208 0.57 -0.6
222,852 - CCNA_00208 0.57 -0.7
222,852 - CCNA_00208 0.57 +3.2
222,852 - CCNA_00208 0.57 -0.2
222,852 - CCNA_00208 0.57 -0.7
222,856 + CCNA_00208 0.58 +0.2
222,857 - CCNA_00208 0.58 +1.2
222,893 + CCNA_00208 0.62 -1.2
222,893 + CCNA_00208 0.62 -0.3
222,896 - CCNA_00208 0.62 -1.3
222,896 - CCNA_00208 0.62 -0.8
222,898 + CCNA_00208 0.62 +1.5
222,901 - CCNA_00208 0.62 -1.0
222,901 - CCNA_00208 0.62 -0.3
222,922 + CCNA_00208 0.65 -1.0
222,922 + CCNA_00208 0.65 +0.4
222,922 + CCNA_00208 0.65 +2.2
222,922 + CCNA_00208 0.65 -1.3
222,930 - CCNA_00208 0.65 +0.1
222,930 - CCNA_00208 0.65 -2.5
222,930 - CCNA_00208 0.65 -0.5
222,930 - CCNA_00208 0.65 -0.8
222,956 + CCNA_00208 0.68 +0.7
222,981 + CCNA_00208 0.71 -3.1
222,981 + CCNA_00208 0.71 +0.2
222,981 + CCNA_00208 0.71 -0.4
222,989 - CCNA_00208 0.71 -1.8
222,989 - CCNA_00208 0.71 -0.6
222,989 - CCNA_00208 0.71 -0.3
223,003 + CCNA_00208 0.73 -0.7
223,011 - CCNA_00208 0.74 -2.0
223,025 - CCNA_00208 0.75 +0.2
223,030 + CCNA_00208 0.75 +0.9
223,030 + CCNA_00208 0.75 -0.8
223,030 + CCNA_00208 0.75 -1.2
223,030 + CCNA_00208 0.75 -1.1
223,030 + CCNA_00208 0.75 -2.2
223,030 + CCNA_00208 0.75 +0.7
223,035 + CCNA_00208 0.76 +1.2
223,035 + CCNA_00208 0.76 +1.5
223,038 - CCNA_00208 0.76 -0.1
223,061 + CCNA_00208 0.79 -1.8
223,061 + CCNA_00208 0.79 +1.8
223,061 + CCNA_00208 0.79 +0.0
223,061 + CCNA_00208 0.79 -1.8
223,061 + CCNA_00208 0.79 +0.1
223,061 + CCNA_00208 0.79 -1.1
223,061 + CCNA_00208 0.79 -1.8
223,069 - CCNA_00208 0.79 -0.6
223,069 - CCNA_00208 0.79 +0.8
223,069 - CCNA_00208 0.79 -0.8
223,089 - CCNA_00208 0.81 -0.8
223,127 + CCNA_00208 0.85 -0.5
223,135 - CCNA_00208 0.86 -0.2
223,164 + CCNA_00208 0.89 +1.2
223,172 - CCNA_00208 0.90 -1.3
223,201 - +0.8
223,206 - -1.3
223,207 - -1.2
223,251 + -0.2
223,270 + +0.7
223,300 - +0.5
223,311 - -0.8
223,353 - +0.1
223,366 + +0.2
223,366 + -1.6
223,366 + +1.7
223,366 + +2.2
223,366 + -0.6
223,374 - +0.3
223,434 - -3.7
223,434 - -5.3
223,434 - -1.2
223,456 + +0.7
223,469 - +0.2
223,498 + +2.2
223,498 + +1.2
223,506 - -0.3
223,551 - CCNA_00209 0.13 +0.2
223,602 + CCNA_00209 0.16 +2.2
223,609 - CCNA_00209 0.16 +1.2
223,619 + CCNA_00209 0.17 +2.2
223,635 - CCNA_00209 0.18 +0.7
223,655 + CCNA_00209 0.19 +0.2
223,689 + CCNA_00209 0.21 +2.2
223,722 + CCNA_00209 0.23 +1.2
223,729 + CCNA_00209 0.24 +0.7
223,743 - CCNA_00209 0.25 +2.2
223,761 + CCNA_00209 0.26 +0.2
223,802 + CCNA_00209 0.29 +1.2
223,838 + CCNA_00209 0.31 +0.2
223,838 + CCNA_00209 0.31 +2.2
223,838 + CCNA_00209 0.31 +1.2
223,846 - CCNA_00209 0.31 +0.7
223,846 - CCNA_00209 0.31 +0.7
223,846 - CCNA_00209 0.31 +0.7
223,851 - CCNA_00209 0.32 -0.1
223,962 + CCNA_00209 0.39 +2.2
223,987 + CCNA_00209 0.40 +2.2
223,995 - CCNA_00209 0.41 -0.3
224,041 + CCNA_00209 0.44 +2.2
224,052 - CCNA_00209 0.44 +0.7
224,060 + CCNA_00209 0.45 +1.2
224,136 + CCNA_00209 0.50 +2.2
224,141 - CCNA_00209 0.50 -1.2
224,141 - CCNA_00209 0.50 -0.6
224,187 - CCNA_00209 0.53 +0.2
224,197 - CCNA_00209 0.54 +1.2
224,223 + CCNA_00209 0.55 +0.7
224,231 - CCNA_00209 0.56 -0.9
224,231 - CCNA_00209 0.56 -1.2
224,231 - CCNA_00209 0.56 +0.2
224,231 - CCNA_00209 0.56 +1.2

Or see this region's nucleotide sequence