Experiment: PYE 0.5x 30C survival rep3 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00130 and CCNA_00131 are separated by 200 nucleotides CCNA_00131 and CCNA_00132 are separated by 91 nucleotides
CCNA_00130: CCNA_00130 - Kup system potassium uptake protein, at 138,921 to 140,918
_00130
CCNA_00131: CCNA_00131 - Rrf2 family protein, at 141,119 to 141,541
_00131
CCNA_00132: CCNA_00132 - ketoacyl reductase hetN, at 141,633 to 142,433
_00132
Position (kb) 141
142 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 141.004 kb on + strand at 141.048 kb on + strand at 141.157 kb on - strand at 141.192 kb on - strand, within CCNA_00131 at 141.210 kb on + strand, within CCNA_00131 at 141.210 kb on + strand, within CCNA_00131 at 141.259 kb on + strand, within CCNA_00131 at 141.259 kb on + strand, within CCNA_00131 at 141.264 kb on + strand, within CCNA_00131 at 141.264 kb on + strand, within CCNA_00131 at 141.264 kb on + strand, within CCNA_00131 at 141.267 kb on - strand, within CCNA_00131 at 141.272 kb on - strand, within CCNA_00131 at 141.274 kb on + strand, within CCNA_00131 at 141.274 kb on + strand, within CCNA_00131 at 141.279 kb on + strand, within CCNA_00131 at 141.292 kb on - strand, within CCNA_00131 at 141.292 kb on - strand, within CCNA_00131 at 141.318 kb on + strand, within CCNA_00131 at 141.328 kb on + strand, within CCNA_00131 at 141.328 kb on + strand, within CCNA_00131 at 141.328 kb on + strand, within CCNA_00131 at 141.345 kb on + strand, within CCNA_00131 at 141.370 kb on - strand, within CCNA_00131 at 141.370 kb on - strand, within CCNA_00131 at 141.372 kb on - strand, within CCNA_00131 at 141.381 kb on + strand, within CCNA_00131 at 141.401 kb on + strand, within CCNA_00131 at 141.409 kb on + strand, within CCNA_00131 at 141.466 kb on + strand, within CCNA_00131 at 141.474 kb on - strand, within CCNA_00131 at 141.505 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.531 kb on + strand at 141.539 kb on - strand at 141.539 kb on - strand at 141.539 kb on - strand at 141.553 kb on + strand at 141.570 kb on + strand at 141.577 kb on + strand at 141.643 kb on + strand at 141.659 kb on - strand at 141.661 kb on - strand at 141.695 kb on + strand at 141.700 kb on + strand at 141.710 kb on + strand at 141.722 kb on + strand, within CCNA_00132 at 141.722 kb on + strand, within CCNA_00132 at 141.769 kb on + strand, within CCNA_00132 at 141.794 kb on + strand, within CCNA_00132 at 141.808 kb on + strand, within CCNA_00132 at 141.816 kb on - strand, within CCNA_00132 at 141.851 kb on - strand, within CCNA_00132 at 141.875 kb on + strand, within CCNA_00132 at 141.890 kb on - strand, within CCNA_00132 at 141.895 kb on - strand, within CCNA_00132 at 141.909 kb on - strand, within CCNA_00132 at 141.911 kb on + strand, within CCNA_00132 at 141.911 kb on + strand, within CCNA_00132 at 141.911 kb on + strand, within CCNA_00132 at 141.912 kb on + strand, within CCNA_00132 at 141.919 kb on - strand, within CCNA_00132 at 141.919 kb on - strand, within CCNA_00132 at 141.920 kb on - strand, within CCNA_00132 at 141.920 kb on - strand, within CCNA_00132 at 141.947 kb on + strand, within CCNA_00132 at 141.947 kb on + strand, within CCNA_00132 at 141.955 kb on - strand, within CCNA_00132 at 141.955 kb on - strand, within CCNA_00132 at 141.966 kb on + strand, within CCNA_00132 at 141.966 kb on + strand, within CCNA_00132 at 141.999 kb on + strand, within CCNA_00132 at 142.013 kb on + strand, within CCNA_00132 at 142.015 kb on - strand, within CCNA_00132 at 142.024 kb on + strand, within CCNA_00132 at 142.027 kb on - strand, within CCNA_00132 at 142.068 kb on - strand, within CCNA_00132 at 142.087 kb on + strand, within CCNA_00132 at 142.095 kb on - strand, within CCNA_00132 at 142.101 kb on + strand, within CCNA_00132 at 142.109 kb on - strand, within CCNA_00132 at 142.126 kb on + strand, within CCNA_00132 at 142.132 kb on - strand, within CCNA_00132 at 142.180 kb on + strand, within CCNA_00132 at 142.183 kb on - strand, within CCNA_00132 at 142.185 kb on + strand, within CCNA_00132 at 142.193 kb on - strand, within CCNA_00132 at 142.193 kb on - strand, within CCNA_00132 at 142.193 kb on - strand, within CCNA_00132 at 142.193 kb on - strand, within CCNA_00132 at 142.245 kb on - strand, within CCNA_00132 at 142.340 kb on + strand, within CCNA_00132 at 142.340 kb on + strand, within CCNA_00132 at 142.379 kb on + strand at 142.386 kb on + strand at 142.428 kb on + strand at 142.436 kb on - strand at 142.436 kb on - strand at 142.436 kb on - strand at 142.436 kb on - strand at 142.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep3 12 days remove 141,004 + -1.0 141,048 + -0.8 141,157 - +1.3 141,192 - CCNA_00131 0.17 +2.3 141,210 + CCNA_00131 0.22 -2.3 141,210 + CCNA_00131 0.22 -1.1 141,259 + CCNA_00131 0.33 -0.9 141,259 + CCNA_00131 0.33 -1.7 141,264 + CCNA_00131 0.34 +2.3 141,264 + CCNA_00131 0.34 -1.4 141,264 + CCNA_00131 0.34 -4.4 141,267 - CCNA_00131 0.35 +2.3 141,272 - CCNA_00131 0.36 -1.6 141,274 + CCNA_00131 0.37 -2.0 141,274 + CCNA_00131 0.37 -3.7 141,279 + CCNA_00131 0.38 -4.2 141,292 - CCNA_00131 0.41 +0.7 141,292 - CCNA_00131 0.41 -0.1 141,318 + CCNA_00131 0.47 +1.3 141,328 + CCNA_00131 0.49 -2.0 141,328 + CCNA_00131 0.49 -1.2 141,328 + CCNA_00131 0.49 -0.9 141,345 + CCNA_00131 0.53 -2.7 141,370 - CCNA_00131 0.59 +0.3 141,370 - CCNA_00131 0.59 -0.9 141,372 - CCNA_00131 0.60 -4.2 141,381 + CCNA_00131 0.62 -2.3 141,401 + CCNA_00131 0.67 -2.2 141,409 + CCNA_00131 0.69 -2.0 141,466 + CCNA_00131 0.82 -2.5 141,474 - CCNA_00131 0.84 -0.3 141,505 + -0.6 141,531 + -0.2 141,531 + +0.7 141,531 + +0.1 141,531 + +0.0 141,531 + +0.2 141,539 - -0.7 141,539 - +0.3 141,539 - +0.9 141,553 + -0.1 141,570 + +0.6 141,577 + -0.0 141,643 + -1.3 141,659 - +0.7 141,661 - -0.7 141,695 + -0.4 141,700 + +0.3 141,710 + +0.0 141,722 + CCNA_00132 0.11 -0.6 141,722 + CCNA_00132 0.11 -0.4 141,769 + CCNA_00132 0.17 -0.0 141,794 + CCNA_00132 0.20 +0.8 141,808 + CCNA_00132 0.22 +0.5 141,816 - CCNA_00132 0.23 -0.3 141,851 - CCNA_00132 0.27 -0.6 141,875 + CCNA_00132 0.30 -0.7 141,890 - CCNA_00132 0.32 -0.3 141,895 - CCNA_00132 0.33 -0.1 141,909 - CCNA_00132 0.34 -1.7 141,911 + CCNA_00132 0.35 -0.9 141,911 + CCNA_00132 0.35 -0.5 141,911 + CCNA_00132 0.35 +0.3 141,912 + CCNA_00132 0.35 -0.4 141,919 - CCNA_00132 0.36 +0.3 141,919 - CCNA_00132 0.36 +0.8 141,920 - CCNA_00132 0.36 -0.9 141,920 - CCNA_00132 0.36 +0.5 141,947 + CCNA_00132 0.39 +1.7 141,947 + CCNA_00132 0.39 -0.6 141,955 - CCNA_00132 0.40 -0.6 141,955 - CCNA_00132 0.40 -1.2 141,966 + CCNA_00132 0.42 -0.2 141,966 + CCNA_00132 0.42 -0.1 141,999 + CCNA_00132 0.46 -1.4 142,013 + CCNA_00132 0.47 -0.7 142,015 - CCNA_00132 0.48 +0.4 142,024 + CCNA_00132 0.49 -3.1 142,027 - CCNA_00132 0.49 -1.4 142,068 - CCNA_00132 0.54 -0.2 142,087 + CCNA_00132 0.57 -1.6 142,095 - CCNA_00132 0.58 -1.9 142,101 + CCNA_00132 0.58 -1.0 142,109 - CCNA_00132 0.59 -2.3 142,126 + CCNA_00132 0.62 +0.5 142,132 - CCNA_00132 0.62 +3.8 142,180 + CCNA_00132 0.68 +0.1 142,183 - CCNA_00132 0.69 -0.9 142,185 + CCNA_00132 0.69 -1.6 142,193 - CCNA_00132 0.70 -2.1 142,193 - CCNA_00132 0.70 -1.1 142,193 - CCNA_00132 0.70 +0.3 142,193 - CCNA_00132 0.70 +0.9 142,245 - CCNA_00132 0.76 -0.6 142,340 + CCNA_00132 0.88 +0.0 142,340 + CCNA_00132 0.88 +0.7 142,379 + +1.3 142,386 + +0.8 142,428 + +0.3 142,436 - +0.7 142,436 - -0.2 142,436 - +0.4 142,436 - -0.5 142,522 - -0.2
Or see this region's nucleotide sequence