Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00055

Experiment: PYE 0.5x 30C survival rep3 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00054 and CCNA_00055 are separated by 189 nucleotidesCCNA_00055 and CCNA_00056 are separated by 45 nucleotidesCCNA_00056 and CCNA_00057 are separated by 8 nucleotides CCNA_00054: CCNA_00054 - tRNA 2-methylthioadenosine synthase, at 56,665 to 58,011 _00054 CCNA_00055: CCNA_00055 - ferric uptake regulation protein, at 58,201 to 58,608 _00055 CCNA_00056: CCNA_00056 - ribosomal-protein-S18-alanine acetyltransferase, at 58,654 to 59,106 _00056 CCNA_00057: CCNA_00057 - glycoprotease family protein, at 59,115 to 59,750 _00057 Position (kb) 58 59Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 57.256 kb on + strand, within CCNA_00054at 57.307 kb on + strand, within CCNA_00054at 57.315 kb on - strand, within CCNA_00054at 57.320 kb on + strand, within CCNA_00054at 57.352 kb on + strand, within CCNA_00054at 57.352 kb on + strand, within CCNA_00054at 57.375 kb on - strand, within CCNA_00054at 57.387 kb on + strand, within CCNA_00054at 57.395 kb on - strand, within CCNA_00054at 57.412 kb on + strand, within CCNA_00054at 57.419 kb on - strand, within CCNA_00054at 57.419 kb on - strand, within CCNA_00054at 57.428 kb on + strand, within CCNA_00054at 57.428 kb on + strand, within CCNA_00054at 57.487 kb on + strand, within CCNA_00054at 57.492 kb on - strand, within CCNA_00054at 57.495 kb on - strand, within CCNA_00054at 57.511 kb on - strand, within CCNA_00054at 57.511 kb on - strand, within CCNA_00054at 57.531 kb on - strand, within CCNA_00054at 57.588 kb on - strand, within CCNA_00054at 57.623 kb on - strand, within CCNA_00054at 57.665 kb on + strand, within CCNA_00054at 57.733 kb on - strand, within CCNA_00054at 57.738 kb on - strand, within CCNA_00054at 57.768 kb on - strand, within CCNA_00054at 57.816 kb on + strand, within CCNA_00054at 57.829 kb on - strand, within CCNA_00054at 57.829 kb on - strand, within CCNA_00054at 57.852 kb on + strand, within CCNA_00054at 57.868 kb on - strand, within CCNA_00054at 57.868 kb on - strand, within CCNA_00054at 57.870 kb on - strand, within CCNA_00054at 57.892 kb on - strandat 57.910 kb on + strandat 57.913 kb on - strandat 57.932 kb on + strandat 57.940 kb on - strandat 57.946 kb on + strandat 57.954 kb on - strandat 58.001 kb on + strandat 58.027 kb on - strandat 58.035 kb on + strandat 58.043 kb on + strandat 58.043 kb on + strandat 58.043 kb on - strandat 58.051 kb on - strandat 58.058 kb on - strandat 58.092 kb on + strandat 58.111 kb on + strandat 58.111 kb on + strandat 58.116 kb on + strandat 58.116 kb on + strandat 58.124 kb on - strandat 58.124 kb on - strandat 58.178 kb on - strandat 58.179 kb on - strandat 58.192 kb on + strandat 58.192 kb on - strandat 58.192 kb on - strandat 58.623 kb on - strandat 58.651 kb on - strandat 58.675 kb on + strandat 58.709 kb on + strand, within CCNA_00056at 58.733 kb on + strand, within CCNA_00056at 58.742 kb on - strand, within CCNA_00056at 58.751 kb on + strand, within CCNA_00056at 58.751 kb on + strand, within CCNA_00056at 58.759 kb on - strand, within CCNA_00056at 58.759 kb on - strandat 58.759 kb on - strand, within CCNA_00056at 58.764 kb on - strand, within CCNA_00056at 58.811 kb on + strand, within CCNA_00056at 58.819 kb on - strand, within CCNA_00056at 58.819 kb on - strand, within CCNA_00056at 58.819 kb on - strand, within CCNA_00056at 58.841 kb on + strand, within CCNA_00056at 58.849 kb on - strand, within CCNA_00056at 58.854 kb on - strand, within CCNA_00056at 58.854 kb on - strand, within CCNA_00056at 58.854 kb on - strand, within CCNA_00056at 58.943 kb on - strand, within CCNA_00056at 58.943 kb on - strand, within CCNA_00056at 58.943 kb on - strand, within CCNA_00056at 58.943 kb on - strand, within CCNA_00056at 58.951 kb on - strand, within CCNA_00056at 59.025 kb on - strand, within CCNA_00056at 59.027 kb on + strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.035 kb on - strand, within CCNA_00056at 59.095 kb on + strandat 59.133 kb on + strandat 59.207 kb on - strand, within CCNA_00057

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 30C survival rep3 12 days
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57,256 + CCNA_00054 0.44 +1.7
57,307 + CCNA_00054 0.48 +1.3
57,315 - CCNA_00054 0.48 +2.9
57,320 + CCNA_00054 0.49 +0.7
57,352 + CCNA_00054 0.51 +2.7
57,352 + CCNA_00054 0.51 +1.8
57,375 - CCNA_00054 0.53 +3.0
57,387 + CCNA_00054 0.54 +3.3
57,395 - CCNA_00054 0.54 +2.0
57,412 + CCNA_00054 0.55 +1.4
57,419 - CCNA_00054 0.56 +2.6
57,419 - CCNA_00054 0.56 +3.2
57,428 + CCNA_00054 0.57 +2.9
57,428 + CCNA_00054 0.57 +1.7
57,487 + CCNA_00054 0.61 +1.3
57,492 - CCNA_00054 0.61 +2.4
57,495 - CCNA_00054 0.62 +2.7
57,511 - CCNA_00054 0.63 +3.2
57,511 - CCNA_00054 0.63 +2.6
57,531 - CCNA_00054 0.64 +2.4
57,588 - CCNA_00054 0.69 +3.0
57,623 - CCNA_00054 0.71 +2.8
57,665 + CCNA_00054 0.74 +2.3
57,733 - CCNA_00054 0.79 +3.2
57,738 - CCNA_00054 0.80 +3.2
57,768 - CCNA_00054 0.82 +2.8
57,816 + CCNA_00054 0.85 +3.3
57,829 - CCNA_00054 0.86 +2.5
57,829 - CCNA_00054 0.86 +0.9
57,852 + CCNA_00054 0.88 +2.0
57,868 - CCNA_00054 0.89 +2.7
57,868 - CCNA_00054 0.89 +2.4
57,870 - CCNA_00054 0.89 +3.1
57,892 - +3.2
57,910 + +1.9
57,913 - +2.9
57,932 + +1.0
57,940 - +3.3
57,946 + +2.3
57,954 - +3.2
58,001 + -0.2
58,027 - +3.0
58,035 + +2.6
58,043 + -0.1
58,043 + -1.5
58,043 - +3.0
58,051 - +0.8
58,058 - +0.2
58,092 + -0.1
58,111 + -0.3
58,111 + -0.7
58,116 + +0.0
58,116 + -1.4
58,124 - +0.5
58,124 - +0.6
58,178 - +0.4
58,179 - +0.7
58,192 + -1.9
58,192 - +1.2
58,192 - +1.1
58,623 - -2.5
58,651 - -3.3
58,675 + +0.7
58,709 + CCNA_00056 0.12 +1.9
58,733 + CCNA_00056 0.17 +1.8
58,742 - CCNA_00056 0.19 +1.2
58,751 + CCNA_00056 0.21 +0.5
58,751 + CCNA_00056 0.21 +0.4
58,759 - CCNA_00056 0.23 -0.3
58,759 - +0.7
58,759 - CCNA_00056 0.23 +0.5
58,764 - CCNA_00056 0.24 +0.9
58,811 + CCNA_00056 0.35 +1.6
58,819 - CCNA_00056 0.36 +1.6
58,819 - CCNA_00056 0.36 +1.4
58,819 - CCNA_00056 0.36 +0.8
58,841 + CCNA_00056 0.41 +1.3
58,849 - CCNA_00056 0.43 +2.8
58,854 - CCNA_00056 0.44 +1.8
58,854 - CCNA_00056 0.44 +2.0
58,854 - CCNA_00056 0.44 +1.6
58,943 - CCNA_00056 0.64 +1.8
58,943 - CCNA_00056 0.64 +1.4
58,943 - CCNA_00056 0.64 +1.6
58,943 - CCNA_00056 0.64 +2.0
58,951 - CCNA_00056 0.66 +0.7
59,025 - CCNA_00056 0.82 +2.5
59,027 + CCNA_00056 0.82 -0.3
59,035 - CCNA_00056 0.84 +2.0
59,035 - CCNA_00056 0.84 +1.6
59,035 - CCNA_00056 0.84 +2.4
59,035 - CCNA_00056 0.84 +1.7
59,035 - CCNA_00056 0.84 +1.7
59,035 - CCNA_00056 0.84 +1.9
59,035 - CCNA_00056 0.84 +1.6
59,095 + +0.7
59,133 + +0.7
59,207 - CCNA_00057 0.14 +4.2

Or see this region's nucleotide sequence