Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20815

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20805 and BWI76_RS20810 overlap by 4 nucleotidesBWI76_RS20810 and BWI76_RS20815 overlap by 4 nucleotidesBWI76_RS20815 and BWI76_RS20820 overlap by 23 nucleotidesBWI76_RS20820 and BWI76_RS20825 are separated by 12 nucleotidesBWI76_RS20825 and BWI76_RS20830 are separated by 159 nucleotides BWI76_RS20805: BWI76_RS20805 - phosphate acetyltransferase, at 4,348,044 to 4,349,060 _RS20805 BWI76_RS20810: BWI76_RS20810 - ethanolamine utilization cobalamin adenosyltransferase, at 4,349,057 to 4,349,860 _RS20810 BWI76_RS20815: BWI76_RS20815 - ethanolamine utilization protein EutQ, at 4,349,857 to 4,350,549 _RS20815 BWI76_RS20820: BWI76_RS20820 - ethanolamine utilization protein EutP, at 4,350,527 to 4,351,006 _RS20820 BWI76_RS20825: BWI76_RS20825 - carboxysome shell protein, at 4,351,019 to 4,351,354 _RS20825 BWI76_RS20830: BWI76_RS20830 - bifunctional malic enzyme oxidoreductase/phosphotransacetylase, at 4,351,514 to 4,353,793 _RS20830 Position (kb) 4349 4350 4351Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4348.910 kb on + strand, within BWI76_RS20805at 4349.142 kb on + strand, within BWI76_RS20810at 4349.150 kb on - strand, within BWI76_RS20810at 4349.150 kb on - strand, within BWI76_RS20810at 4349.150 kb on - strand, within BWI76_RS20810at 4349.150 kb on - strand, within BWI76_RS20810at 4349.196 kb on - strand, within BWI76_RS20810at 4349.340 kb on + strand, within BWI76_RS20810at 4349.958 kb on - strand, within BWI76_RS20815at 4349.963 kb on + strand, within BWI76_RS20815at 4350.030 kb on + strand, within BWI76_RS20815at 4350.040 kb on - strand, within BWI76_RS20815at 4350.080 kb on - strand, within BWI76_RS20815at 4350.095 kb on + strand, within BWI76_RS20815at 4350.141 kb on + strand, within BWI76_RS20815at 4350.197 kb on - strand, within BWI76_RS20815at 4350.216 kb on + strand, within BWI76_RS20815at 4350.224 kb on - strand, within BWI76_RS20815at 4350.314 kb on + strand, within BWI76_RS20815at 4350.351 kb on + strand, within BWI76_RS20815at 4350.606 kb on - strand, within BWI76_RS20820at 4350.609 kb on + strand, within BWI76_RS20820at 4350.657 kb on + strand, within BWI76_RS20820at 4350.665 kb on - strand, within BWI76_RS20820at 4350.700 kb on + strand, within BWI76_RS20820at 4350.757 kb on - strand, within BWI76_RS20820at 4350.761 kb on + strand, within BWI76_RS20820at 4350.763 kb on - strand, within BWI76_RS20820at 4350.771 kb on - strand, within BWI76_RS20820at 4350.778 kb on - strand, within BWI76_RS20820at 4350.795 kb on + strand, within BWI76_RS20820at 4350.795 kb on + strand, within BWI76_RS20820at 4350.796 kb on + strand, within BWI76_RS20820at 4350.803 kb on - strand, within BWI76_RS20820at 4350.813 kb on + strand, within BWI76_RS20820at 4350.813 kb on + strand, within BWI76_RS20820at 4350.850 kb on - strand, within BWI76_RS20820at 4350.850 kb on - strand, within BWI76_RS20820at 4350.863 kb on + strand, within BWI76_RS20820at 4350.886 kb on - strand, within BWI76_RS20820at 4350.948 kb on + strand, within BWI76_RS20820at 4350.956 kb on - strand, within BWI76_RS20820at 4351.022 kb on + strandat 4351.023 kb on - strandat 4351.030 kb on - strandat 4351.050 kb on - strandat 4351.050 kb on - strandat 4351.050 kb on - strandat 4351.050 kb on - strandat 4351.077 kb on + strand, within BWI76_RS20825at 4351.077 kb on + strandat 4351.077 kb on + strand, within BWI76_RS20825at 4351.077 kb on + strand, within BWI76_RS20825at 4351.077 kb on + strand, within BWI76_RS20825at 4351.077 kb on + strand, within BWI76_RS20825at 4351.077 kb on + strand, within BWI76_RS20825at 4351.077 kb on + strand, within BWI76_RS20825at 4351.077 kb on - strand, within BWI76_RS20825at 4351.077 kb on - strand, within BWI76_RS20825at 4351.077 kb on - strand, within BWI76_RS20825at 4351.077 kb on - strand, within BWI76_RS20825at 4351.077 kb on - strandat 4351.077 kb on - strand, within BWI76_RS20825at 4351.082 kb on + strand, within BWI76_RS20825at 4351.085 kb on - strand, within BWI76_RS20825at 4351.085 kb on - strand, within BWI76_RS20825at 4351.085 kb on - strand, within BWI76_RS20825at 4351.087 kb on - strand, within BWI76_RS20825at 4351.091 kb on + strand, within BWI76_RS20825at 4351.095 kb on - strand, within BWI76_RS20825at 4351.099 kb on - strand, within BWI76_RS20825at 4351.221 kb on - strand, within BWI76_RS20825at 4351.221 kb on - strand, within BWI76_RS20825at 4351.283 kb on - strand, within BWI76_RS20825at 4351.310 kb on - strand, within BWI76_RS20825at 4351.312 kb on - strand, within BWI76_RS20825at 4351.349 kb on + strandat 4351.356 kb on + strandat 4351.356 kb on + strandat 4351.364 kb on - strandat 4351.364 kb on - strandat 4351.364 kb on - strandat 4351.364 kb on - strandat 4351.368 kb on + strandat 4351.376 kb on - strandat 4351.376 kb on - strandat 4351.376 kb on - strandat 4351.526 kb on + strandat 4351.526 kb on + strandat 4351.529 kb on - strandat 4351.534 kb on - strandat 4351.534 kb on - strandat 4351.534 kb on - strandat 4351.539 kb on + strandat 4351.539 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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4,348,910 + BWI76_RS20805 0.85 +0.1
4,349,142 + BWI76_RS20810 0.11 +0.3
4,349,150 - BWI76_RS20810 0.12 +0.2
4,349,150 - BWI76_RS20810 0.12 +0.4
4,349,150 - BWI76_RS20810 0.12 -1.1
4,349,150 - BWI76_RS20810 0.12 +0.1
4,349,196 - BWI76_RS20810 0.17 -1.4
4,349,340 + BWI76_RS20810 0.35 +1.1
4,349,958 - BWI76_RS20815 0.15 -0.5
4,349,963 + BWI76_RS20815 0.15 +1.3
4,350,030 + BWI76_RS20815 0.25 +1.1
4,350,040 - BWI76_RS20815 0.26 -0.6
4,350,080 - BWI76_RS20815 0.32 -0.2
4,350,095 + BWI76_RS20815 0.34 -0.1
4,350,141 + BWI76_RS20815 0.41 -0.2
4,350,197 - BWI76_RS20815 0.49 +0.6
4,350,216 + BWI76_RS20815 0.52 +0.3
4,350,224 - BWI76_RS20815 0.53 -0.4
4,350,314 + BWI76_RS20815 0.66 +0.1
4,350,351 + BWI76_RS20815 0.71 -0.1
4,350,606 - BWI76_RS20820 0.16 -0.1
4,350,609 + BWI76_RS20820 0.17 -0.4
4,350,657 + BWI76_RS20820 0.27 +0.5
4,350,665 - BWI76_RS20820 0.29 +0.6
4,350,700 + BWI76_RS20820 0.36 -0.9
4,350,757 - BWI76_RS20820 0.48 -1.2
4,350,761 + BWI76_RS20820 0.49 -0.4
4,350,763 - BWI76_RS20820 0.49 -0.3
4,350,771 - BWI76_RS20820 0.51 -0.5
4,350,778 - BWI76_RS20820 0.52 +0.2
4,350,795 + BWI76_RS20820 0.56 -0.1
4,350,795 + BWI76_RS20820 0.56 +0.4
4,350,796 + BWI76_RS20820 0.56 +0.7
4,350,803 - BWI76_RS20820 0.57 -0.2
4,350,813 + BWI76_RS20820 0.60 +0.2
4,350,813 + BWI76_RS20820 0.60 +0.1
4,350,850 - BWI76_RS20820 0.67 +3.4
4,350,850 - BWI76_RS20820 0.67 -0.2
4,350,863 + BWI76_RS20820 0.70 -0.6
4,350,886 - BWI76_RS20820 0.75 -0.0
4,350,948 + BWI76_RS20820 0.88 +0.6
4,350,956 - BWI76_RS20820 0.89 +1.2
4,351,022 + +1.2
4,351,023 - +1.4
4,351,030 - -0.8
4,351,050 - +0.4
4,351,050 - +0.1
4,351,050 - +0.3
4,351,050 - +0.0
4,351,077 + BWI76_RS20825 0.17 +0.8
4,351,077 + +0.4
4,351,077 + BWI76_RS20825 0.17 -0.7
4,351,077 + BWI76_RS20825 0.17 +0.3
4,351,077 + BWI76_RS20825 0.17 +0.5
4,351,077 + BWI76_RS20825 0.17 -0.2
4,351,077 + BWI76_RS20825 0.17 -0.8
4,351,077 + BWI76_RS20825 0.17 -0.6
4,351,077 - BWI76_RS20825 0.17 -1.3
4,351,077 - BWI76_RS20825 0.17 +0.2
4,351,077 - BWI76_RS20825 0.17 -2.9
4,351,077 - BWI76_RS20825 0.17 -0.8
4,351,077 - +0.8
4,351,077 - BWI76_RS20825 0.17 +1.1
4,351,082 + BWI76_RS20825 0.19 -0.7
4,351,085 - BWI76_RS20825 0.20 -0.3
4,351,085 - BWI76_RS20825 0.20 -1.6
4,351,085 - BWI76_RS20825 0.20 -0.4
4,351,087 - BWI76_RS20825 0.20 -0.2
4,351,091 + BWI76_RS20825 0.21 -1.7
4,351,095 - BWI76_RS20825 0.23 +0.3
4,351,099 - BWI76_RS20825 0.24 +2.2
4,351,221 - BWI76_RS20825 0.60 -0.4
4,351,221 - BWI76_RS20825 0.60 +0.4
4,351,283 - BWI76_RS20825 0.79 -0.7
4,351,310 - BWI76_RS20825 0.87 +1.1
4,351,312 - BWI76_RS20825 0.87 -2.3
4,351,349 + -0.2
4,351,356 + +0.8
4,351,356 + +1.5
4,351,364 - -1.1
4,351,364 - +0.2
4,351,364 - -0.9
4,351,364 - -0.5
4,351,368 + +0.1
4,351,376 - +0.2
4,351,376 - -1.1
4,351,376 - -0.1
4,351,526 + +0.7
4,351,526 + +0.5
4,351,529 - -0.0
4,351,534 - -2.1
4,351,534 - -0.4
4,351,534 - +0.3
4,351,539 + +0.6
4,351,539 + -1.3

Or see this region's nucleotide sequence