Experiment: L-Threonine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20750 and BWI76_RS20755 are separated by 10 nucleotides BWI76_RS20755 and BWI76_RS20760 are separated by 9 nucleotides BWI76_RS20760 and BWI76_RS20765 are separated by 20 nucleotides
BWI76_RS20750: BWI76_RS20750 - carboxysome structural protein EutK, at 4,337,612 to 4,338,103
_RS20750
BWI76_RS20755: BWI76_RS20755 - microcompartment protein EutL, at 4,338,114 to 4,338,773
_RS20755
BWI76_RS20760: BWI76_RS20760 - ethanolamine ammonia-lyase small subunit, at 4,338,783 to 4,339,676
_RS20760
BWI76_RS20765: BWI76_RS20765 - ethanolamine ammonia lyase large subunit, at 4,339,697 to 4,341,058
_RS20765
Position (kb) 4338
4339
4340 Strain fitness (log2 ratio) -1
0
1 at 4337.969 kb on - strand, within BWI76_RS20750 at 4338.257 kb on - strand, within BWI76_RS20755 at 4338.576 kb on + strand, within BWI76_RS20755 at 4338.587 kb on - strand, within BWI76_RS20755 at 4338.667 kb on - strand, within BWI76_RS20755 at 4338.714 kb on + strand at 4339.259 kb on - strand, within BWI76_RS20760 at 4339.278 kb on - strand, within BWI76_RS20760 at 4339.440 kb on - strand, within BWI76_RS20760 at 4339.558 kb on + strand, within BWI76_RS20760 at 4339.843 kb on + strand, within BWI76_RS20765 at 4339.957 kb on + strand, within BWI76_RS20765 at 4340.401 kb on - strand, within BWI76_RS20765 at 4340.450 kb on + strand, within BWI76_RS20765 at 4340.585 kb on + strand, within BWI76_RS20765 at 4340.649 kb on + strand, within BWI76_RS20765
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (N) remove 4,337,969 - BWI76_RS20750 0.73 -0.5 4,338,257 - BWI76_RS20755 0.22 -0.5 4,338,576 + BWI76_RS20755 0.70 +0.3 4,338,587 - BWI76_RS20755 0.72 +0.3 4,338,667 - BWI76_RS20755 0.84 -0.7 4,338,714 + +0.6 4,339,259 - BWI76_RS20760 0.53 -0.2 4,339,278 - BWI76_RS20760 0.55 -0.1 4,339,440 - BWI76_RS20760 0.73 +0.1 4,339,558 + BWI76_RS20760 0.87 +0.2 4,339,843 + BWI76_RS20765 0.11 -0.0 4,339,957 + BWI76_RS20765 0.19 -1.0 4,340,401 - BWI76_RS20765 0.52 +1.2 4,340,450 + BWI76_RS20765 0.55 +0.8 4,340,585 + BWI76_RS20765 0.65 +0.1 4,340,649 + BWI76_RS20765 0.70 -1.0
Or see this region's nucleotide sequence