Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20495

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20495 and BWI76_RS20500 are separated by 379 nucleotides BWI76_RS20495: BWI76_RS20495 - alanine transaminase, at 4,290,961 to 4,292,199 _RS20495 BWI76_RS20500: BWI76_RS20500 - signal transduction histidine kinase LytS, at 4,292,579 to 4,294,276 _RS20500 Position (kb) 4290 4291 4292 4293Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4289.971 kb on - strandat 4289.971 kb on - strandat 4290.008 kb on + strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.016 kb on - strandat 4290.046 kb on + strandat 4290.046 kb on + strandat 4290.091 kb on + strandat 4290.096 kb on + strandat 4290.096 kb on + strandat 4290.101 kb on + strandat 4290.101 kb on + strandat 4290.102 kb on + strandat 4290.135 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.145 kb on + strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.153 kb on - strandat 4290.155 kb on + strandat 4290.155 kb on + strandat 4290.163 kb on - strandat 4290.164 kb on - strandat 4290.164 kb on - strandat 4290.166 kb on + strandat 4290.169 kb on - strandat 4290.188 kb on - strandat 4290.194 kb on + strandat 4290.288 kb on + strandat 4290.288 kb on + strandat 4290.289 kb on + strandat 4290.289 kb on + strandat 4290.289 kb on + strandat 4290.291 kb on + strandat 4290.291 kb on + strandat 4290.291 kb on + strandat 4290.291 kb on + strandat 4290.297 kb on - strandat 4290.299 kb on - strandat 4290.299 kb on - strandat 4290.306 kb on + strandat 4290.315 kb on + strandat 4290.322 kb on + strandat 4290.322 kb on - strandat 4290.323 kb on - strandat 4290.334 kb on + strandat 4290.369 kb on + strandat 4290.369 kb on + strandat 4290.377 kb on - strandat 4290.377 kb on - strandat 4290.377 kb on - strandat 4290.377 kb on - strandat 4290.386 kb on - strandat 4290.408 kb on + strandat 4290.446 kb on - strandat 4290.446 kb on - strandat 4290.448 kb on - strandat 4290.513 kb on - strandat 4290.698 kb on + strandat 4290.711 kb on - strandat 4290.721 kb on - strandat 4290.729 kb on + strandat 4290.743 kb on + strandat 4290.751 kb on - strandat 4290.987 kb on - strandat 4290.997 kb on + strandat 4291.005 kb on - strandat 4291.005 kb on - strandat 4291.005 kb on - strandat 4291.005 kb on - strandat 4291.191 kb on + strand, within BWI76_RS20495at 4291.191 kb on + strand, within BWI76_RS20495at 4291.199 kb on - strand, within BWI76_RS20495at 4291.232 kb on - strand, within BWI76_RS20495at 4291.232 kb on - strand, within BWI76_RS20495at 4291.286 kb on + strand, within BWI76_RS20495at 4291.336 kb on - strand, within BWI76_RS20495at 4291.362 kb on + strand, within BWI76_RS20495at 4291.362 kb on - strand, within BWI76_RS20495at 4291.414 kb on - strand, within BWI76_RS20495at 4291.431 kb on + strand, within BWI76_RS20495at 4291.439 kb on - strand, within BWI76_RS20495at 4291.439 kb on - strand, within BWI76_RS20495at 4291.640 kb on - strand, within BWI76_RS20495at 4291.653 kb on + strand, within BWI76_RS20495at 4291.762 kb on + strand, within BWI76_RS20495at 4291.829 kb on - strand, within BWI76_RS20495at 4291.832 kb on - strand, within BWI76_RS20495at 4291.863 kb on - strand, within BWI76_RS20495at 4291.864 kb on + strand, within BWI76_RS20495at 4292.021 kb on + strand, within BWI76_RS20495at 4292.071 kb on - strand, within BWI76_RS20495at 4292.222 kb on + strandat 4292.224 kb on - strandat 4292.230 kb on - strandat 4292.367 kb on - strandat 4292.571 kb on + strandat 4292.738 kb on + strandat 4292.738 kb on + strandat 4292.749 kb on + strand, within BWI76_RS20500at 4292.749 kb on + strand, within BWI76_RS20500at 4292.749 kb on + strand, within BWI76_RS20500at 4292.757 kb on - strand, within BWI76_RS20500at 4292.768 kb on - strand, within BWI76_RS20500at 4292.972 kb on - strand, within BWI76_RS20500

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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4,289,971 - -1.1
4,289,971 - +0.3
4,290,008 + -0.6
4,290,016 - -0.4
4,290,016 - +1.6
4,290,016 - -0.4
4,290,016 - -0.0
4,290,016 - -0.3
4,290,016 - -0.8
4,290,016 - -0.4
4,290,016 - -2.0
4,290,016 - +0.8
4,290,016 - +0.2
4,290,046 + -0.4
4,290,046 + +1.0
4,290,091 + -0.6
4,290,096 + -1.3
4,290,096 + -0.4
4,290,101 + +1.1
4,290,101 + +0.7
4,290,102 + -2.2
4,290,135 + -0.8
4,290,145 + +0.6
4,290,145 + -0.1
4,290,145 + -1.7
4,290,145 + +0.5
4,290,145 + +0.7
4,290,145 + +0.2
4,290,145 + +0.6
4,290,145 + -0.8
4,290,145 + -0.0
4,290,145 + +0.6
4,290,145 + -0.4
4,290,145 + +0.9
4,290,145 + -0.2
4,290,153 - +2.6
4,290,153 - +1.0
4,290,153 - -0.7
4,290,153 - -0.6
4,290,153 - +0.6
4,290,153 - +0.8
4,290,153 - -1.0
4,290,153 - -0.2
4,290,155 + +0.4
4,290,155 + +0.0
4,290,163 - +1.7
4,290,164 - -1.0
4,290,164 - -1.0
4,290,166 + +1.2
4,290,169 - -1.5
4,290,188 - +0.7
4,290,194 + +0.2
4,290,288 + -0.5
4,290,288 + +0.4
4,290,289 + +0.5
4,290,289 + +0.5
4,290,289 + +1.4
4,290,291 + -0.4
4,290,291 + +2.4
4,290,291 + -1.0
4,290,291 + -0.1
4,290,297 - -1.2
4,290,299 - +0.5
4,290,299 - -0.2
4,290,306 + +0.1
4,290,315 + -2.1
4,290,322 + -0.3
4,290,322 - +0.4
4,290,323 - -0.6
4,290,334 + -1.3
4,290,369 + -0.3
4,290,369 + +1.0
4,290,377 - +0.3
4,290,377 - +1.1
4,290,377 - -3.0
4,290,377 - +0.0
4,290,386 - +0.0
4,290,408 + -0.6
4,290,446 - -0.2
4,290,446 - +0.3
4,290,448 - -0.0
4,290,513 - +0.6
4,290,698 + -0.2
4,290,711 - -0.0
4,290,721 - -0.4
4,290,729 + +0.3
4,290,743 + -0.9
4,290,751 - -0.1
4,290,987 - -0.7
4,290,997 + -2.6
4,291,005 - +0.0
4,291,005 - -0.0
4,291,005 - -0.5
4,291,005 - -1.3
4,291,191 + BWI76_RS20495 0.19 -1.1
4,291,191 + BWI76_RS20495 0.19 -0.5
4,291,199 - BWI76_RS20495 0.19 -2.0
4,291,232 - BWI76_RS20495 0.22 -2.3
4,291,232 - BWI76_RS20495 0.22 -2.8
4,291,286 + BWI76_RS20495 0.26 -0.3
4,291,336 - BWI76_RS20495 0.30 -1.7
4,291,362 + BWI76_RS20495 0.32 +0.2
4,291,362 - BWI76_RS20495 0.32 -1.9
4,291,414 - BWI76_RS20495 0.37 -0.5
4,291,431 + BWI76_RS20495 0.38 +0.0
4,291,439 - BWI76_RS20495 0.39 -0.2
4,291,439 - BWI76_RS20495 0.39 -2.5
4,291,640 - BWI76_RS20495 0.55 -2.3
4,291,653 + BWI76_RS20495 0.56 -1.1
4,291,762 + BWI76_RS20495 0.65 -1.8
4,291,829 - BWI76_RS20495 0.70 -0.4
4,291,832 - BWI76_RS20495 0.70 -1.9
4,291,863 - BWI76_RS20495 0.73 -3.1
4,291,864 + BWI76_RS20495 0.73 -1.2
4,292,021 + BWI76_RS20495 0.86 +0.4
4,292,071 - BWI76_RS20495 0.90 -1.0
4,292,222 + +0.4
4,292,224 - +0.1
4,292,230 - +1.0
4,292,367 - +0.7
4,292,571 + +1.1
4,292,738 + +3.4
4,292,738 + +1.1
4,292,749 + BWI76_RS20500 0.10 -0.3
4,292,749 + BWI76_RS20500 0.10 -3.0
4,292,749 + BWI76_RS20500 0.10 +0.6
4,292,757 - BWI76_RS20500 0.10 +0.1
4,292,768 - BWI76_RS20500 0.11 -0.3
4,292,972 - BWI76_RS20500 0.23 -0.3

Or see this region's nucleotide sequence