Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18725

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18720 and BWI76_RS18725 are separated by 9 nucleotidesBWI76_RS18725 and BWI76_RS18730 overlap by 8 nucleotides BWI76_RS18720: BWI76_RS18720 - MFS transporter, at 3,881,175 to 3,882,509 _RS18720 BWI76_RS18725: BWI76_RS18725 - hypothetical protein, at 3,882,519 to 3,883,250 _RS18725 BWI76_RS18730: BWI76_RS18730 - LysR family transcriptional regulator, at 3,883,243 to 3,884,160 _RS18730 Position (kb) 3882 3883 3884Strain fitness (log2 ratio) -3 -2 -1 0 1at 3881.581 kb on + strand, within BWI76_RS18720at 3881.582 kb on - strand, within BWI76_RS18720at 3881.589 kb on - strand, within BWI76_RS18720at 3881.868 kb on + strand, within BWI76_RS18720at 3882.092 kb on - strand, within BWI76_RS18720at 3882.160 kb on - strand, within BWI76_RS18720at 3882.161 kb on + strand, within BWI76_RS18720at 3882.253 kb on + strand, within BWI76_RS18720at 3882.660 kb on + strand, within BWI76_RS18725at 3883.010 kb on + strand, within BWI76_RS18725at 3883.032 kb on + strand, within BWI76_RS18725at 3883.090 kb on - strand, within BWI76_RS18725at 3883.320 kb on + strandat 3883.438 kb on + strand, within BWI76_RS18730at 3883.502 kb on - strand, within BWI76_RS18730at 3883.556 kb on + strand, within BWI76_RS18730at 3884.076 kb on - strandat 3884.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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3,881,581 + BWI76_RS18720 0.30 -1.1
3,881,582 - BWI76_RS18720 0.30 -1.7
3,881,589 - BWI76_RS18720 0.31 -0.1
3,881,868 + BWI76_RS18720 0.52 -0.7
3,882,092 - BWI76_RS18720 0.69 +0.9
3,882,160 - BWI76_RS18720 0.74 -2.8
3,882,161 + BWI76_RS18720 0.74 -0.3
3,882,253 + BWI76_RS18720 0.81 +0.5
3,882,660 + BWI76_RS18725 0.19 +0.1
3,883,010 + BWI76_RS18725 0.67 +0.4
3,883,032 + BWI76_RS18725 0.70 -0.8
3,883,090 - BWI76_RS18725 0.78 -1.4
3,883,320 + +0.7
3,883,438 + BWI76_RS18730 0.21 +0.1
3,883,502 - BWI76_RS18730 0.28 +0.3
3,883,556 + BWI76_RS18730 0.34 -0.1
3,884,076 - +1.1
3,884,224 + +0.7

Or see this region's nucleotide sequence