Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14375

Experiment: L-Threonine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS14360 and BWI76_RS14365 are separated by 96 nucleotidesBWI76_RS14365 and BWI76_RS14370 overlap by 17 nucleotidesBWI76_RS14370 and BWI76_RS14375 are separated by 116 nucleotidesBWI76_RS14375 and BWI76_RS14380 overlap by 1 nucleotides BWI76_RS14360: BWI76_RS14360 - hypothetical protein, at 3,001,372 to 3,001,932 _RS14360 BWI76_RS14365: BWI76_RS14365 - transcriptional regulator, at 3,002,029 to 3,002,361 _RS14365 BWI76_RS14370: BWI76_RS14370 - hypothetical protein, at 3,002,345 to 3,002,539 _RS14370 BWI76_RS14375: BWI76_RS14375 - hypothetical protein, at 3,002,656 to 3,003,090 _RS14375 BWI76_RS14380: BWI76_RS14380 - hypothetical protein, at 3,003,090 to 3,005,456 _RS14380 Position (kb) 3002 3003 3004Strain fitness (log2 ratio) -2 -1 0 1 2at 3001.905 kb on + strandat 3001.913 kb on - strandat 3001.976 kb on - strandat 3001.976 kb on - strandat 3002.083 kb on + strand, within BWI76_RS14365at 3002.094 kb on + strand, within BWI76_RS14365at 3002.209 kb on + strand, within BWI76_RS14365at 3002.209 kb on + strand, within BWI76_RS14365at 3002.245 kb on + strand, within BWI76_RS14365at 3002.250 kb on + strand, within BWI76_RS14365at 3002.250 kb on + strand, within BWI76_RS14365at 3002.255 kb on + strand, within BWI76_RS14365at 3002.261 kb on + strand, within BWI76_RS14365at 3002.290 kb on + strand, within BWI76_RS14365at 3002.306 kb on + strand, within BWI76_RS14365at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.408 kb on + strand, within BWI76_RS14370at 3002.416 kb on - strand, within BWI76_RS14370at 3002.431 kb on + strand, within BWI76_RS14370at 3002.431 kb on + strand, within BWI76_RS14370at 3002.436 kb on + strand, within BWI76_RS14370at 3002.436 kb on + strand, within BWI76_RS14370at 3002.436 kb on + strand, within BWI76_RS14370at 3002.441 kb on + strand, within BWI76_RS14370at 3002.462 kb on + strand, within BWI76_RS14370at 3002.462 kb on + strand, within BWI76_RS14370at 3002.470 kb on - strandat 3002.472 kb on + strand, within BWI76_RS14370at 3002.472 kb on + strand, within BWI76_RS14370at 3002.472 kb on + strand, within BWI76_RS14370at 3002.472 kb on + strand, within BWI76_RS14370at 3002.477 kb on + strand, within BWI76_RS14370at 3002.480 kb on - strand, within BWI76_RS14370at 3002.594 kb on + strandat 3002.602 kb on - strandat 3002.602 kb on - strandat 3002.762 kb on - strand, within BWI76_RS14375at 3002.801 kb on + strand, within BWI76_RS14375at 3002.801 kb on + strand, within BWI76_RS14375at 3002.838 kb on - strand, within BWI76_RS14375at 3002.901 kb on + strand, within BWI76_RS14375at 3002.957 kb on - strand, within BWI76_RS14375at 3003.020 kb on - strand, within BWI76_RS14375at 3003.070 kb on + strandat 3003.125 kb on - strandat 3003.219 kb on - strandat 3003.525 kb on + strand, within BWI76_RS14380at 3003.525 kb on + strand, within BWI76_RS14380at 3003.525 kb on + strand, within BWI76_RS14380at 3003.533 kb on - strand, within BWI76_RS14380at 3003.538 kb on - strand, within BWI76_RS14380at 3003.954 kb on + strand, within BWI76_RS14380at 3004.040 kb on + strand, within BWI76_RS14380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
remove
3,001,905 + -0.5
3,001,913 - +1.1
3,001,976 - +1.4
3,001,976 - -0.3
3,002,083 + BWI76_RS14365 0.16 -0.6
3,002,094 + BWI76_RS14365 0.20 +0.5
3,002,209 + BWI76_RS14365 0.54 -1.8
3,002,209 + BWI76_RS14365 0.54 +0.1
3,002,245 + BWI76_RS14365 0.65 +0.1
3,002,250 + BWI76_RS14365 0.66 +0.8
3,002,250 + BWI76_RS14365 0.66 -1.8
3,002,255 + BWI76_RS14365 0.68 +0.8
3,002,261 + BWI76_RS14365 0.70 -0.9
3,002,290 + BWI76_RS14365 0.78 -0.1
3,002,306 + BWI76_RS14365 0.83 +0.5
3,002,408 + BWI76_RS14370 0.32 -1.0
3,002,408 + BWI76_RS14370 0.32 -0.4
3,002,408 + BWI76_RS14370 0.32 -1.1
3,002,408 + BWI76_RS14370 0.32 -0.1
3,002,408 + BWI76_RS14370 0.32 -1.8
3,002,408 + BWI76_RS14370 0.32 -0.1
3,002,408 + BWI76_RS14370 0.32 +0.1
3,002,408 + BWI76_RS14370 0.32 -0.1
3,002,408 + BWI76_RS14370 0.32 +0.2
3,002,408 + BWI76_RS14370 0.32 -0.4
3,002,408 + BWI76_RS14370 0.32 +0.4
3,002,408 + BWI76_RS14370 0.32 +0.1
3,002,408 + BWI76_RS14370 0.32 +0.3
3,002,416 - BWI76_RS14370 0.36 +0.1
3,002,431 + BWI76_RS14370 0.44 +0.5
3,002,431 + BWI76_RS14370 0.44 +0.1
3,002,436 + BWI76_RS14370 0.47 -0.3
3,002,436 + BWI76_RS14370 0.47 -0.6
3,002,436 + BWI76_RS14370 0.47 -0.2
3,002,441 + BWI76_RS14370 0.49 -1.0
3,002,462 + BWI76_RS14370 0.60 +0.4
3,002,462 + BWI76_RS14370 0.60 -0.1
3,002,470 - +2.1
3,002,472 + BWI76_RS14370 0.65 +2.4
3,002,472 + BWI76_RS14370 0.65 -0.8
3,002,472 + BWI76_RS14370 0.65 +0.9
3,002,472 + BWI76_RS14370 0.65 -1.0
3,002,477 + BWI76_RS14370 0.68 -0.3
3,002,480 - BWI76_RS14370 0.69 +1.0
3,002,594 + -0.7
3,002,602 - +1.8
3,002,602 - +0.1
3,002,762 - BWI76_RS14375 0.24 -2.4
3,002,801 + BWI76_RS14375 0.33 -2.5
3,002,801 + BWI76_RS14375 0.33 +0.6
3,002,838 - BWI76_RS14375 0.42 +0.1
3,002,901 + BWI76_RS14375 0.56 -1.7
3,002,957 - BWI76_RS14375 0.69 -1.8
3,003,020 - BWI76_RS14375 0.84 -1.4
3,003,070 + +0.7
3,003,125 - +0.3
3,003,219 - -1.4
3,003,525 + BWI76_RS14380 0.18 -0.6
3,003,525 + BWI76_RS14380 0.18 -1.4
3,003,525 + BWI76_RS14380 0.18 -2.0
3,003,533 - BWI76_RS14380 0.19 +0.4
3,003,538 - BWI76_RS14380 0.19 -1.6
3,003,954 + BWI76_RS14380 0.37 -1.8
3,004,040 + BWI76_RS14380 0.40 -1.2

Or see this region's nucleotide sequence