Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07945

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07940 and BWI76_RS07945 are separated by 241 nucleotidesBWI76_RS07945 and BWI76_RS07950 are separated by 77 nucleotidesBWI76_RS07950 and BWI76_RS07955 are separated by 199 nucleotides BWI76_RS07940: BWI76_RS07940 - alkyl hydroperoxide reductase subunit C, at 1,687,175 to 1,687,738 _RS07940 BWI76_RS07945: BWI76_RS07945 - alkyl hydroperoxide reductase subunit F, at 1,687,980 to 1,689,545 _RS07945 BWI76_RS07950: BWI76_RS07950 - universal stress protein G, at 1,689,623 to 1,690,051 _RS07950 BWI76_RS07955: BWI76_RS07955 - nucleoside diphosphate kinase regulator, at 1,690,251 to 1,690,661 _RS07955 Position (kb) 1687 1688 1689 1690Strain fitness (log2 ratio) -2 -1 0 1 2at 1687.058 kb on + strandat 1687.110 kb on + strandat 1687.118 kb on - strandat 1687.118 kb on - strandat 1687.140 kb on + strandat 1687.148 kb on - strandat 1687.169 kb on + strandat 1687.177 kb on - strandat 1687.177 kb on - strandat 1687.267 kb on - strand, within BWI76_RS07940at 1687.352 kb on + strand, within BWI76_RS07940at 1687.373 kb on + strand, within BWI76_RS07940at 1687.380 kb on + strand, within BWI76_RS07940at 1687.560 kb on + strand, within BWI76_RS07940at 1687.568 kb on - strand, within BWI76_RS07940at 1687.608 kb on + strand, within BWI76_RS07940at 1687.645 kb on - strand, within BWI76_RS07940at 1687.713 kb on + strandat 1687.816 kb on - strandat 1687.930 kb on + strandat 1688.269 kb on - strand, within BWI76_RS07945at 1688.364 kb on + strand, within BWI76_RS07945at 1688.372 kb on - strand, within BWI76_RS07945at 1688.671 kb on - strand, within BWI76_RS07945at 1688.732 kb on - strand, within BWI76_RS07945at 1688.856 kb on - strand, within BWI76_RS07945at 1689.177 kb on - strand, within BWI76_RS07945at 1689.205 kb on + strand, within BWI76_RS07945at 1689.555 kb on + strandat 1689.576 kb on + strandat 1689.576 kb on + strandat 1689.584 kb on - strandat 1689.596 kb on - strandat 1689.596 kb on - strandat 1689.667 kb on - strand, within BWI76_RS07950at 1689.791 kb on - strand, within BWI76_RS07950at 1689.882 kb on - strand, within BWI76_RS07950at 1689.882 kb on - strand, within BWI76_RS07950at 1689.937 kb on - strand, within BWI76_RS07950at 1690.194 kb on - strandat 1690.363 kb on - strand, within BWI76_RS07955at 1690.482 kb on + strand, within BWI76_RS07955

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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1,687,058 + -0.4
1,687,110 + +0.3
1,687,118 - +0.5
1,687,118 - +0.1
1,687,140 + +0.0
1,687,148 - -0.5
1,687,169 + +1.9
1,687,177 - -1.2
1,687,177 - -1.0
1,687,267 - BWI76_RS07940 0.16 +0.7
1,687,352 + BWI76_RS07940 0.31 -0.9
1,687,373 + BWI76_RS07940 0.35 -1.3
1,687,380 + BWI76_RS07940 0.36 +0.1
1,687,560 + BWI76_RS07940 0.68 +0.7
1,687,568 - BWI76_RS07940 0.70 +0.2
1,687,608 + BWI76_RS07940 0.77 -0.9
1,687,645 - BWI76_RS07940 0.83 -0.8
1,687,713 + +0.9
1,687,816 - +1.5
1,687,930 + +0.1
1,688,269 - BWI76_RS07945 0.18 -0.5
1,688,364 + BWI76_RS07945 0.25 -0.2
1,688,372 - BWI76_RS07945 0.25 +0.3
1,688,671 - BWI76_RS07945 0.44 -0.3
1,688,732 - BWI76_RS07945 0.48 -1.2
1,688,856 - BWI76_RS07945 0.56 -1.4
1,689,177 - BWI76_RS07945 0.76 +1.3
1,689,205 + BWI76_RS07945 0.78 -1.0
1,689,555 + -0.6
1,689,576 + +0.8
1,689,576 + +0.7
1,689,584 - -0.1
1,689,596 - -0.0
1,689,596 - -2.1
1,689,667 - BWI76_RS07950 0.10 +1.0
1,689,791 - BWI76_RS07950 0.39 +0.1
1,689,882 - BWI76_RS07950 0.60 +0.6
1,689,882 - BWI76_RS07950 0.60 -0.4
1,689,937 - BWI76_RS07950 0.73 -0.1
1,690,194 - -0.3
1,690,363 - BWI76_RS07955 0.27 +1.8
1,690,482 + BWI76_RS07955 0.56 +0.1

Or see this region's nucleotide sequence